Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PIP5K1A_0001000

Sequence Length

424 nt

GC Content

0.4151

GAGUUCAAAACCAUCUUAAAGUUCAGCUCAUUUCUCAUUCUGAAGUUUCCUUUUUUCACACUUCUCAGAUUAUACUGAUGGAUUUUCACUUCCUUUACAUUUUCUCCUUCCUCUCAAUAGUGAAUAUUAGUCUCCAGUGGCUGGGUAGUAGCAAGUAAAUUUAUGAAGAAUCAUAGUUGUGUUUGCCAAGUGACUGGAAAUCAGCUUCCCCAGUACCUCUUCACCACAAACACAAUUAAAGGUGGGGCCGAGGAUCAAAAUGGAAUGCUUCCUUAGGACUGGUACAGAGUUACUCAGAAAAAUUUUCUGUGACAUGGUGUGAUGAUUCGACUUUGCCUUUUUUUUUUUGAGACGGAGUCUCGCUCUGUCGCCAGGCUGGAGUACAGUGGCAUGAUCUCUGCUUACUGCAAUCUCUGCCUCCCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-95.00 kcal/mol

Ensemble Metrics

Free Energy: -103.72

Frequency: 0.0000

Diversity: 120.60

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((.............(((.(((((.............))))).)))...........))))((..((....(((((((....((((((............................))))))))))))).((((((.(((.(((((..((((......((((((....))))))))))..))))).))).))))))....(((((((......((((....((((..............))))....))))........)))).)))(((...)))((((((((((((..(.((((((...)))))).).(((......)))....(((((((.(((.........))).)))))))..))))))).)))))((((.....))))((((.(((...(((.....))))))..))))))..))

Thermodynamic Ensemble Prediction

(((,{,,...{,,......{.(((((|............|||||{|,........,,,,|||,,{{((......}})},|{(,.{{{{{{,,,.........................)))))}.}}}.||.((((((.(((.(((((..((((.,,...(({({{....)}})),))))..))))).))).))))))....{((((((...,,.((((,{(,((,,.............}))))}}..)))),.......)))}.)))||{...))){{((((((((((..{.((((({...}))))).),{,,,,}}}|}.,....((({{{{.{{{.........))|,|}}})))..))))))).))))}||||||,..||||||{{.||.,,}|||..,,,|||..},,)))},....)