Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PIP5K1A_0006500

Sequence Length

411 nt

GC Content

0.5061

GUUUGUUAAGAAGUUGGAGCACUCUUGGAAAGCCCUGGUACAUGACGGAGACACUGUCUCAGUGCAUCGCCCAGGCUUCUACGCUGAACGGUUCCAGCGCUUCAUGUGCAACACAGUAUUUAAGAAGAUUCCCUUGAAGCCUUCUCCUUCCAAAAAGUUUCGGUCUGGCUCAUCUUUCUCUCGGCGAGCAGGCUCCAGUGGCAACUCCUGCAUUACUUACCAGCCAUCGGUCUCUGGGGAACACAAGGCACAAGUGACAACAAAGGCAGAAGUGGAGCCAGGCGUUCACCUUGGUCGUCCUGAUGUUUUACCUCAGACUCCACCUUUGGAGGAAAUCAGUGAGGGCUCGCCUAUUCCUGACCCCAGUUUCUCACCUCUAGUUGGAGAGACUUUGCAAAUGCUAACUACAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-105.10 kcal/mol

Ensemble Metrics

Free Energy: -114.56

Frequency: 0.0000

Diversity: 157.96

Structure Visualization

Structure Prediction

MFE Structure Prediction

((......(((((((((.(((.....((..(((((((((..(((((.(((((...))))).)).))).))).(((((((..(((((........)))))((((..((((......))))....))))........)))))))..((((.(((((........(((((((((....(((((.(((.((.(.((((..(((((((.....)))..))))....))))...).)).))))))))(((...((....((....))....))....))))))))))))........(((..(((.(((.((...)).)))))).)))..)))))))))........))))))..))......)).).))))))))).))((.(((((((................)))))))..))

Thermodynamic Ensemble Prediction

((({((.,,({{((((((((..,{.((({{(((({(((...(((((.(((((...))))).)).))).,.))))))))))},{,,|,...}}}}))))}||||.,((({..,,,,}}}}.,.{||||..,,.,,|}}}{||||||,{{{(({{,..,....,(((((((((.,{.,,,.,.,||.||}|,||||..{(((((,.....}}}..,}}}....})))...}|}}.|||}}}}}{{,.,|({...,({|,..}}...{||.,.,|||}})}}}}}}..,,,},,|||,.|||||{{.||...,),))))}|,|||..,})))))},..,,,|,|||||}},,}},..,.}))},,,,|{((((((.{,.......})))))))),.||,,,,}},.......,}