Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PLXND1_0003500

Sequence Length

317 nt

GC Content

0.6088

ACCACGUGACUGUUGAGAUGUCUGUGAGGGUCAAUGGGCGGAACAUCGUCAAGGCCAAUUUCACCAUCUACGACUGCAGCCGCACUGCACAAGUGUACCCCCACACAGCCUGUACCAGCUGCCUGUCGGCACAGUGGCCCUGUUUCUGGUGCAGCCAGCAGCACUCCUGUGUUUCCAACCAGUCUCGGUGCGAGGCCUCACCAAACCCCACGAGCCCUCAGGACUGCCCCCGGACCCUGCUCUCACCCCUGGCACCCGUGCCUACGGGUGGCUCCCAGAACAUCCUGGUGCCUCUGGCCAACACUGCCUUUUUCCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-98.10 kcal/mol

Ensemble Metrics

Free Energy: -103.24

Frequency: 0.0002

Diversity: 70.52

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.((((.(((.........)))))))((((((...((((((....((((...((.........))....)))).(((((.....)))))...(((......))).((((........))))((((..(((...((((....(((..(((((..(((.(((.(....(((.(((...))))))....).)))..)))..)))))))).))))..)))..)))).))))))...))))))((.(........)))((((((....))))))(((..((((......)))).))))((((..((........))..))))

Thermodynamic Ensemble Prediction

(.((((.(((.........)))))))((((((...((((((....{(((..,((.........}}....)))).(((((.....)))))...(((,.....})),|{({,{{,,,||||||{{((..(((,,,({((...,(((..(((({..{||,|{||{|||.|||,|||..,)}})))....)}))),,))),,|}}}}}}}.}}}},,)})..)})).))))))...)))))),,....{{{{..|||(,,,,|}}}.},))))(((..((((......)))).))))((((..{,........,,..))))