Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_POLR2A_0001900

Sequence Length

250 nt

GC Content

0.3640

GCCAUGCAGAAGUCUGGGCGUCCCCUCAAGUCCCUGAAGCAGCGGUUGAAGGGCAAGGAAGGCCGGGUGCGAGGGAACCUGAUGGGCAAAAGAGUGGACUNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUUACAGCUGAUCCUCGGGAAGAACAAAGCUAAAGCUGCCUUUUGUCUGUUAUUUUAUUUUUUUGAAGUUUAAAUAAAGUUUACUAAUUUUGACCAAAAGU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-41.60 kcal/mol

Ensemble Metrics

Free Energy: -45.70

Frequency: 0.0013

Diversity: 44.80

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((.((((.....((.(((.(..(((...(.((((..(((....)))..))))).))).).))).)))))).)).(..((..(((.(((((.((((((((.....................................................(((((....((..(......)..))....))))).............((((((......))))))........))))))))..))))).)))..)))

Thermodynamic Ensemble Prediction

.((.((((....{(({(,(.({{(((,,,,.((((,.,,|}}.}))),.)))),.,)),.},))})))))).)).{..((..(((.(((((.((((((((.....................................................(((((....({..(......)..}}....)))))....||||.,..,((((((......})))))..,,)))}))))))))..))))).)))..)))