Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_POLR2A_0002000

Sequence Length

544 nt

GC Content

0.5551

GCCGGGUGCGAGGGAACCUGAUGGGCAAAAGAGUGGACUUCUCGGCCCGUACUGUCAUCACCCCCGACCCCAACCUCUCCAUUGACCAGGUUGGCGUGCCCCGCUCCAUUGCUGCCAACAUGACCUUUGCGGAGAUUGUCACCCCCUUCAACAUUGACAGGUGGAACGGCACAUGUGUGAUGGGGACAUUGUUAUCUUCAACCGGCAGCCAACUCUGCACAAAAUGUCCAUGAUGGGGCAUCGGGUCCGCAUUCUCCCAUGGUCUACCUUUCGCUUGAAUCUUAGUGUGACAACUCCGUACAAUGCAGACUUUGACGGGGAUGAGAUGAACUUGCACCUGCCACAGUCUCUGGAGACGCGAGCAGAGAUCCAGGAGCUGGCCAUGGUUCCUCGCAUGAUUGUCACCCCCCAGAGCAAUCGGCCUGUCAUGGGUAUUGUGCAGGACACACUCACAGCAGUGCGCAAAUUCACCAAGAGAGACGUCUUCCUGGAGCGGGGUGAAGUGAUGAACCUCCUGAUGUUCCUGUCGACGUGGGAUGGGAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-173.80 kcal/mol

Ensemble Metrics

Free Energy: -185.20

Frequency: 0.0000

Diversity: 213.71

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.(((((((((........((((((...((((.....))))..))))))...(((.(((.(((((....(((..(((.(((((..((.(((((((.((...........))))))))).)).....(((((((.((((((((...(((((...(((.((((((....((.((((.(.((((.((((.(((.......)))(((((((......)))).....((((((......))))))))))))).))))..).)))))))))))).))).))))).....).))))))))))))))))))).)))..))).))))).))))))...)))))))))))(...(((((((..........))))))).(((((.........(((((.((((.......(((((((((((.(....((..((.((.(((...(((((((.................))))))).....))).)).)).))....)))))...))))))).)))).))))))))))...((((((((.......)))))))))

Thermodynamic Ensemble Prediction

(..((({,((.(((....,{((((((...,(((....,))})..)))))}...}}}},,.}))|)),}))}..)((.((((((..(((.(((((({.(((((((((({..{((({{,,|,{{.,...{{(((({,((((({((,,,{((({...{{{.{{(((|....,|,|||{,|,||{|,||{|.,,|.......,,.,.|||||,.....||||,{,..{(((((,,{,,,||}|}},|||}}}.}}}},.},}}}||}}}}}}}.}||,|}}},....,}.)}))}}}||||||,|||,|.,|,,,}||,||||}.||{{|,,,.||}||.||||||..,|||{{{(||,...,...}})})}),}|||{||{|....}))}}}}},||,{((({{({,,,,..,,|,|}}}}}},)}})}}}|))}}}}||||}}}}.,.{{{{....,.}})),),,........,.{{,|,...)))}..)))))))))))}.......((((........)))).})))))).))))))))).))