Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_POLR2A_0002100

Sequence Length

469 nt

GC Content

0.5416

ACUUCAAGAACUAGUGCGCAGGGGGAACAGCCAGUACCCAGGCGCCAAGUACAUCAUCCGAGACAAUGGUGAUCGCAUUGACUUGCGUUUCCACCCCAAGCCCAGUGACCUUCACCUGCAGACCGGCUAUAAGGUGGAACGGCACAUGUGUGAUGGGGACAUUGUUAUCUUCAACCGGCAGCCAACUCUGCACAAAAUGUCCAUGAUGGGGCAUCGGGUCCGCAUUCUCCCAUGGUCUACCUUUCGCUUGAAUCUUAGUGUGACAACUCCGUACAAUGCAGACUUUGACGGGGAUGAGAUGAACUUGCACCUGCCACAGUCUCUGGAGACGCGAGCAGAGAUCCAGGAGCUGGCCAUGGUUCCUCGCAUGAUUGUCACCCCCCAGAGCAAUCGGCCUGUCAUGGGUAUUGUGCAGGACACACUCACAGCAGUGCGCAAAUUCACCAAGAGAGACGUCUUCCUGGAGCGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-139.90 kcal/mol

Ensemble Metrics

Free Energy: -147.92

Frequency: 0.0000

Diversity: 166.09

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((.....(((.(.((((..(((..((.....)).)))..))))).))).((((((........))))))(((((((.....(((..(((((((...((((((((((...))).)))......))))....)))))))..)))...)))))))(((((........))))).....((((......)))).....((((((......)))))).))))((((..((((.(.((((........((((((......((((((.....((((((((((((...((.(((((((.(((.((.(((((....((.((..(.(((((((..........)))))))...)..)).))....))))).)).)))(((((((........)).)))))..))))))).))))))))))).))))))))).....))).))).......)))).).))))..(((....)))))))

Thermodynamic Ensemble Prediction

(((,.....{{{.|,((((..(((,.((.,,,,||.}}|,,|}|}},|||.{{(({{,,,{{{(,{((||,(((((((,,...(((..(((((((...((((((((((...)))},))......))))....)))))))..))),..))))))),|{{{|||||,,.,,..,....,((((......)))).....{(((((......)))))}.}}))||{|,,|{{{,|,|{||,....,,,(((({{......||||{|.....(((((,((({{,...{,,|||||||}|||.||}|,||||||.||}|{,...(((((((..........)))))))..,)}.))}))}..,}))))})},|}|(((((({........},|))))),})}})}}},|}}}}}|||}}.}}}}}})))....,))),))),,.....}}}}.|||}},..|||,,.,))})))}