Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_POLR2A_0003700

Sequence Length

250 nt

GC Content

0.3400

UGUGACAACUCCGUACAAUGCAGACUUUGACGGGGAUGAGAUGAACUUGCACCUGCCACAGUCUCUGGAGACGCGAGCAGAGAUCCAGGAGCUGGCCAUGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUUACAGCUGAUCCUCGGGAAGAACAAAGCUAAAGCUGCCUUUUGUCUGUUAUUUUAUUUUUUUGAAGUUUAAAUAAAGUUUACUAAUUUUGACCAAAAGU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-35.60 kcal/mol

Ensemble Metrics

Free Energy: -40.11

Frequency: 0.0007

Diversity: 73.27

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((.((((((.(((........))))))))).))..(((..(..((.((((.....(((((((..........))))))).)))).)).)..)))...................................................)))))(((.....(((((((((.((((((.......))..)))))))((.(((((((((...........)))))))))..))...)))))).....)))

Thermodynamic Ensemble Prediction

((({{({.((((((.(((........))))))))).}},,{{{,.{,,{{.,((({,...(((({{{.,,,,....,))),},}{||||{||{|...........................................................))|||..,}}|.}|,.{{,,{{{{((....},,),..})))))),,.{((({({{{...,,,,,,..}}}}}}}}}},}}.){||||,....}))))