Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_POLR2A_0007600

Sequence Length

1596 nt

GC Content

0.5620

GUGGUGCCAUGUCUCCCAGCUACUCGCCAACGUCACCUGCCUACGAGCCCCGCUCUCCUGGGGGCUACACACCCCAGAGUCCCUCUUAUUCCCCCACUUCACCCUCCUACUCCCCUACCUCUCCAUCCUAUUCUCCAACCAGUCCCAACUAUAGUCCCACAUCACCCAGCUAUUCGCCAACGUCACCCAGCUACUCACCGACCUCUCCCAGCUACUCACCCACCUCUCCCAGCUACUCGCCCACCUCUCCCAGCUACUCGCCCACCUCUCCCAGCUACUCACCCACUUCCCCUAGCUACUCGCCCACUUCCCCUAGCUACUCGCCAACGUCUCCCAGCUACUCACCGACAUCUCCCAGCUACUCGCCAACUUCACCCAGCUAUUCUCCCACUUCUCCCAGCUACUCACCUACCUCUCCAAGCUAUUCACCCACCUCCCCCAGCUACUCACCCACUUCCCCAAGUUACUCACCCACCAGCCCGAACUAUUCUCCAACCAGUCCCAAUUACACCCCAACAUCACCCAGCUACAGCCCGACAUCACCCAGCUAUUCACCUACUAGUCCCAACUACACACCUACCAGCCCUAACUACAGCCCAACCUCUCCAAGCUACUCUCCAACAUCACCCAGCUAUUCCCCGACCUCACCAAGUUACUCCCCUUCCAGCCCACGAUACACACCACAGUCUCCAACCUAUACCCCAAGCUCACCCAGCUACAGCCCCAGCUCGCCCAGCUACAGCCCAGCCUCACCCAAGUACACCCCAACCAGUCCUUCUUACAGUCCCAGCUCCCCAGAGUAUACCCCAACCUCUCCCAAGUACUCACCUACCAGUCCCAAAUAUUCACCCACCUCUCCCAAGUACUCGCCUACCAGUCCCACCUAUUCACCCACCACCCCAAAAUACUCCCCAACAUCUCCUACUUAUUCCCCAACCUCUCCAGUCUACACCCCAACCUCUCCCAAGUACUCACCUACUAGCCCCACUUACUCGCCCACUUCCCCCAAGUACUCGCCCACCAGCCCCACCUACUCGCCCACCUCCCCCAAAGGCUCAACCUACUCUCCCACUUCCCCUGGUUACUCGCCCACCAGCCCCACCUACAGUCUCACAAGCCCGGCUAUCAGCCCGGAUGACAGUGACGAGGAGAACUGAGGGCACGUGGGGUGCGGCAGCGGGCUAGGGCCCAGGGCAGCUUGCCCGUGCUGCUGUGCAGUUCUUGCCUCCCUCACGGGGCGUCACCCCCAGCCCAGCUCCGUUGUACAUAAAUGCCUUGUGGCAGAGCUCCCGGUGAACUUCUGGAUCCCGUUUCUGAUGCAGACUCUUGUCUUGUUCUCCACUUGUGCUGUUAGAACUCACUGGCCCAGUGGUGUUCUCACUCCUACCCCACCCACCCCCUGCCUGUCCCCAAAUUGAAGAUCCUUCCUUGCCUGUGGCUUGAUGCGGGGCGGGUAAAGGGUAUUUUAACUUAGGGGUAGUUCCUGCUGUGAGUGGUUACAGCUGAUCCUCGGGAAGAACAAAGCUAAAGCUGCCUUUUGUCUGUUAUUUUAUUUUUUUGAAGUUUAAAUAAAGUUUACUAAUUUUGACCAAAAGU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-266.12 kcal/mol

Ensemble Metrics

Free Energy: -297.72

Frequency: 0.0000

Diversity: 351.43

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.((((..........(((.....((....))....))).....((((...))))..((((((........))))))................................................................(((.......((((.............((.....))............))))......))).......((((.................))))..................((.....))...........(((((...............)))))...)))))((((....(((((...((....))......)))))...((.((((.....(((((....((...((((.(((((((.................((((.................)))).................((((((((((..(((.((((((((((...((((....(((((............................((((..(((((...((((((((...((((.......(((..........((((....))))..........)))........................((((.................)))).......(((........))).......................(((((((....................((((.....))))...((...((((.....))))...)).........................(((((..((((.(((((....((((....))))..................((((((....................................)))))).........................................................................(((((....((((.....((((....((((((....................................))))))(((......(((((((......((((...........(((.....))).......((.(((.(((.((((((.((......))..........(((.......((.((((...)))).))..))))))))).))).))).)).))))..))))))))))((((((((((.((((...(((((...)))))(.(((((...))))).)..(((((......)))))..........))))))).)))))))........(((....))))))).....)))).....)))))..........((.((((((....))).))))).........))))).))))...)))))....))))))).............................))))........((((...)))).....))))))))))))).)))))))))...))))....)))))).)))).))).......))))))))))..)))))......))))))......))...))))).....)))).)).((((((......)))))).....(((((((....))))))).....))))

Thermodynamic Ensemble Prediction

({((((,...{,.....,({....,|}...,|......}.....((((...))))..((((((........)))))),{.............................................................,{,....,,,,,,|,............,(({....{,....|,.....||}|.......|,,.......{{{{.................||||....,,...........,{{,....},...........{{{{,...............}}|||....,....,......{((({,...{.....},.....))))}....,.(({{.....(((((....,............((((.{{{{,{{........,((((.................||||.................||||{{{{{{..(((.((((((((((...((((....(((((..,............,},..........((((..(((((...((((((((,..{{,,.......(((..........((((....))))..........})}.........,{.............((((.................)))).......{,.........|,,..................{{...{{{{{{{.|,.................((((.....||||...{{...||||.,...})))...|}...},.........|..,.......(((((..((((.(((((...,(,,.....((({{{................,|||||}........,..,......,,,,,,...,,,,,.,,||||||.,......,|,..............................................................,,,,{....,,,,.....,,,.....((((,.....,,,,.{,..,........|,..,{,,.....,))),,,.{{......||,,.........({{............,}}}..............,,.{{{.{((,(({{{,.{{...,,,)}..........{{{.......{(,((((...)))).))..},,}))))).))),))}.)).))))..)))))))|{|({((((((((.((({...(((({...}}}}}{.({{({...)}}}}.,.|({{{{......)))))}....,}}.,))))})),))))))}.......,|{|}}}.)),)))).....))))}}...})))}....,,....||.((((((....)))},)),,....,,,).))))).))))...)))))....)}))))).,,.......................,..})},........((((...))))..,).))))))))))))).)))))))))...))))....)))))).)))).)))....}..)))))))))}..)))))......)))}})}}...}))}..))))).....}))).||.{{({{(,,,...|}}},,..,}}||||||,....}}},,}},...,}))}