Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PPP1R12A_0005900

Sequence Length

826 nt

GC Content

0.4031

UACCUCAAAUCGUUUGUGGGCUGAGGAUAGUACUGAGAAAGAAAAGGACAGUGUUCCUACGGCAGUGACCAUUCCUGUUGCUCCAACUGUUGUAAAUGCUGCAGCUUCUACCACAACCCUGACUACAACUACUGCUGGCACUGUCUCCUCCACAACAGAGGUCAGGGAGAGACGCAGAUCAUACCUCACUCCUGUUAGGGAUGAAGAGUCUGAAUCCCAAAGAAAAGCAAGAUCUAGACAAGCAAGACAAUCUAGAAGAUCAACACAGGGAGUGACAUUAACUGAUCUUCAAGAAGCUGAGAAAACAAUAGGAAGAAGUCGUUCUACCCGAACCAGAGAACAAGAAAAUGAAGAAAAAGAAAAAGAGGAAAAAGAGAAACAAGAUAAAGAGAAACAAGAAGAAAAGAAGGAGUCAGAAACAUCUAGAGAAGAUGAAUAUAAACAAAAGUACUCCAGAACGUAUGAUGAGACUUACCAGCGUUAUAGGCCAGUAUCAACUUCAAGUUCAACCACUCCAUCCUCUUCACUUUCUACUAUGAGCAGUUCACUGUAUGCUUCAAGUCAACUAAACAGGCCAAAUAGUCUUGUAGGCAUAACUUCUGCUUACUCCAGAGGAAUAACAAAAGAAAAUGAAAGAGAGGGAGAAAAAAGAGAAGAGGAGAAAGAAGGAGAAGAUAAAUCACAACCUAAAUCAAUCAGAGAACGACGACGACCAAGAGAGAAAAGAAGAUCUACAGGAGUUUCAUUUUGGACACAAGAUAGUGAUGAAAAUGAACAAGAACAACAAUCAGACACAGAAGAGGGAUCCAAUAAGAAAGAAACUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-158.80 kcal/mol

Ensemble Metrics

Free Energy: -174.25

Frequency: 0.0000

Diversity: 151.72

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((..((......))..)))))....))(((((.......((((......)))).((((((((.....((..((((........((((((.....))))))........))))...)).......))))))))....((((((.(((...((....))...)))))))))..((((...((((((((((((..(((((..((...))..)))))...........((((((...............(((.((((((((......(......)......)))))))).)))................((..(..((((((((..........(((.....(((..(((((.......................................................(((((......(((((.....))))).......((....)))))))....(.(((((((...........))))))).)..........)))))..))).....)))..((((((((.((((......(((((((.......(((((((((((...((((...........)))))))).)))))))....)))))))((((..............................))))...)))).))))))))......(((....((....))....)))...........))))))))..)..)).............))))))))))))))((((((((.(.(((......))).).))))))))........................))))))))..............)))))

Thermodynamic Ensemble Prediction

(((((((..((,.....))..)))))....))(((((.......((((......)))).{(((((.({....}))))))}((((..{((((((.....((.((((((((.......((((((({....,,.,{(.{({...........,},,..}}).))))))))...,..,.((((((....((((((((((..(((((..((...))..)))))............{,((((((............)))))}.,,}}...))}}))))))).......)))))).}.))))))))))...))))))|{..(..((((((((..........,.{.....,,,..{{,,,.............,.........................................(((((......(((((.....)))))........,....}}))))).,{{(.,.{({((,.,,,..{{.,},,,.,,,)..,}}.}}}.}})),.}))).....|||{.((((((((.(((({{.,,.{((((((.......(((((((((((...{{{{...........}})})))).)))))))....))))))}{(((...,,,.......................,)})),...}}).))))))))....,.,||,,..{,....,,....,}}...,,......))))))))..)..}}...,,{,.........))).,.))))}((((((((.(.(((......))).}.)))))))}............||...,.,......,}..}},.............)))))