Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PPP1R12A_0006000

Sequence Length

958 nt

GC Content

0.4144

UUCUAGUGUUCCAAGCACCACAUCAACACCAACAGUUACCUCUGCAGCUGGGCUUCAGAAAAGCCUGCUUUCCAGCACAAGCACUACUACAAAGAUUACAACGGGUUCUUCCUCAGCAGGCACACAAAGCAGUACCUCAAAUCGUUUGUGGGCUGAGGAUAGUACUGAGAAAGAAAAGGACAGUGUUCCUACGGCAGUGACCAUUCCUGUUGCUCCAACUGUUGUAAAUGCUGCAGCUUCUACCACAACCCUGACUACAACUACUGCUGGCACUGUCUCCUCCACAACAGAGGUCAGGGAGAGACGCAGAUCAUACCUCACUCCUGUUAGGGAUGAAGAGUCUGAAUCCCAAAGAAAAGCAAGAUCUAGACAAGCAAGACAAUCUAGAAGAUCAACACAGGGAGUGACAUUAACUGAUCUUCAAGAAGCUGAGAAAACAAUAGGAAGAAGUCGUUCUACCCGAACCAGAGAACAAGAAAAUGAAGAAAAAGAAAAAGAGGAAAAAGAGAAACAAGAUAAAGAGAAACAAGAAGAAAAGAAGGAGUCAGAAACAUCUAGAGAAGAUGAAUAUAAACAAAAGUACUCCAGAACGUAUGAUGAGACUUACCAGCGUUAUAGGCCAGUAUCAACUUCAAGUUCAACCACUCCAUCCUCUUCACUUUCUACUAUGAGCAGUUCACUGUAUGCUUCAAGUCAACUAAACAGGCCAAAUAGUCUUGUAGGCAUAACUUCUGCUUACUCCAGAGGAAUAACAAAAGAAAAUGAAAGAGAGGGAGAAAAAAGAGAAGAGGAGAAAGAAGGAGAAGAUAAAUCACAACCUAAAUCAAUCAGAGAACGACGACGACCAAGAGAGAAAAGAAGAUCUACAGGAGUUUCAUUUUGGACACAAGAUAGUGAUGAAAAUGAACAAGAACAACAAUCAGACACAGAAGAGGGAUCCAAUAAGAAAGAAACUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-188.40 kcal/mol

Ensemble Metrics

Free Energy: -207.68

Frequency: 0.0000

Diversity: 207.81

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((.(((((........................((.....(((((((.((((((.....))))))((((........)))).............(((((((((((.((((((((((...(.((((((................))))))))))))))).)).))...........((((......)))).((((((.((....))))))))......)))))))))..))))))).....)).....(((((((.....((.(((.((...............)).)))))))))))).(((.............)))((((((((..(((((..((...))..)))))...........((((((...............(((.((((((((......(......)......)))))))).)))................((..(..((((((((..........(((.....(((..(((((.......................................................(((((......(((((.....))))).......((....)))))))....(.(((((((...........))))))).)..........)))))..))).....)))..((((((((.((((......(((((((.......(((((((((((...((((...........)))))))).)))))))....)))))))((((..............................))))...)))).))))))))......(((....((....))....)))...........))))))))..)..)).............))))))))))))))((((((((.(.(((......))).).))))))))...............)))))))))..(((.................)))..

Thermodynamic Ensemble Prediction

((((.(((((....,,................{(({,....|||.|{{|{(((({.....}))))}|{{,.,,,|}...}}},..........,.{({({{((({{,{{((((((((...(.((({{{,,.............,))))))})))))))).,}.,}|,.,...,...((((......)))).{(((((.((....}}))))))|||,..}}))))}},..,||.((((((((.......((((((({....,,.,((.{({...........,},,..}}),))))))))...,..,.((((((....((((((((((..(((((..((...))..)))))............{{((((((............)))))}.,,}}...})}}))))))).......)))))).}.))))))))}}....,..,.((..(..((((((((..........,.{.....,,,..{{,,,.............,,........................................(((((......(((((.....)))))........,....}}))))).,{{(.,.{({((,.,,,..{{.,},,,.,,,)..,}}.}}}.}})),.}))).....|||{.((((((((.(((({{.,,.{((((((.......(((((((((((...{{{{...........}})})))).)))))))....))))))}{(((...,,,.......................,)})),...}}).))))))))....,.,||,,..{,....,,....,}}...,,......))))))))..)..))...,,{,.........))).,.}}}||((((((((.(.(((......))).}.)))))))}............,,.}}))))))}..({{.||..........}}..)))..