Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PPP1R12A_0011600

Sequence Length

663 nt

GC Content

0.4012

GGCCAAACAGCCUUUGAUGUAGCAGAUGAAGACAUUUUAGGAUAUUUAGAAGAGUUGCAAAAGAAACAAAAUCUGCUCCAUAGUGAAAAACGGGACAAGAAAUCUCCACUAAUUGAAUCAACAGCAAAUAUGGACAAUAAUCAGUCACAGAAGACCUUUAAAAACAAAGAGACGUUGAUUAUUGAACCAGAGAAAAAUGCAUCCCGUAUUGAAUCUCUGGAACAAGAAAAGGUUGAUGAAGAAGAAGAAGGAAAGAAGGAUGAGUCUAGCUGCUCUAGUGAAGAAGAUGAGGAAGAUGACUCGGAAUCAGAAGCUGAAACAGAUAAGACAAAACCCCUGGCUUCUGUAACUAAUGCCAACACUUCUAGUACACAAGCAGCUCCUGUAGCUGUUACAACACCUACUGUGUCAUCAGGUCAAGCAACACCUACAUCACCUAUUAAAAAGUUUCCAACCACAGCUACAAAAAUUUCUCCCAAAGAAGAAGAGAGAAAAGAUGAGUCUCCUGCAACUUGGAGGUUAGGACUUAGAAAGACGGGCAGCUAUGGUGCACUUGCUGAAAUCACAGCAUCUAAAGAGGGUCAGAAAGAAAAAGAUACUGCAGGUGUUACACGUUCAGCUUCAAGUCCCAGACUUUCCUCCUCUUUGGAUAAUAAAGAAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-139.30 kcal/mol

Ensemble Metrics

Free Energy: -152.05

Frequency: 0.0000

Diversity: 171.59

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((......)))((((((((((....(((.(((((..((((....(((((((.((((((............(((..(((...((.....)).)))..)))....(((.((..((..((((((............((((((((((((......)))((((........))))....)))))))))..(((((((..(((((.....)))))...)))))))...........))))))....))..))..))).........(((((....(.(((.............))).)....)))))((...((((((((.......................))))))))...))..)).)))).)))))))......(((((((.....)))))))......))))..))))).))).............)))))))..........((((.....((((.((((.......((((((.(.........).))))))...((((((((((.((...)).)))...)))))))...........)))).))))..))))((((......))))((((((((((((...(((((.....(((..((.((.((.........)).)).)).))).....))))).)))))))))))).........)))

Thermodynamic Ensemble Prediction

(((......)))((({((({((,,{{({{.{{({(,,((((..,,{({{{{{.{{{{{{..|,.......,|||},|{|,,.((.....,},|||..,,,..,|||||||..{{..{((({(..,.....,,..((((((((((((......)))((((.......,)),}....)))))))))..(((((((..(((((.....)))))...)))))))...........))))})....,,,.,|.,||,.,,..,{.,{{(((,..{(,{({..,{....,....|||......}})))|....{{((((({|...,,,..............,}}}))))))...},..})}})}}.)))))}||,,...((({(((...,,||}||}}......}}}}..))))}.}}|{{{........,,))}}}}},.........,{{{.....{{{{.||||,|.....((((((.,.........).))))},...((((((((((.({...}).)))...)))))))........,},}))).))))}.}}}|((((......)))){(((((((((((...{{{{{.....(({.{({.{{|({.......,.))})),),.})}.....))))).)))))))))))}.........}))