Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PPP1R12A_0011900

Sequence Length

447 nt

GC Content

0.3915

GGCCAAACAGCCUUUGAUGUAGCAGAUGAAGACAUUUUAGGAUAUUUAGAAGAGUUGCAAAAGAAACAAAAUCUGCUCCAUAGUGAAAAACGGGACAAGAAAUCUCCACUAAUUGAAUCAACAGCAAAUAUGGACAAUAAUCAGUCACAGAAGACCUUUAAAAACAAAGAGACGUUGAUUAUUGAACCAGAGAAAAAUGCAUCCCGUAUUGAAUCUCUGGAACAAGAAAAGGUUGAUGAAGAAGAAGAAGGAAAGAAGGAUGAGUCUAGCUGCUCUAGUGAAGAAGAUGAGGAAGAUGACUCGGAAUCAGAAGCUGAAACAGAUAAGACAAAACCCCUGGCUUCUGUAACUAAUGCCAACACUUCUAGUACACAAGCAGCUCCUGUAGCUGUUACAACACCUACUGUGUCAUCAGGUCAAGCAACACCUACAUCACCUAUUAAAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-88.10 kcal/mol

Ensemble Metrics

Free Energy: -96.44

Frequency: 0.0000

Diversity: 83.87

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((......)))(((...((((..((((..(((((..((((....(((((((.((((((............(((..(((...((.....)).)))..)))....(((.((..((..((((((............((((((((((((......)))((((........))))....)))))))))..(((((((..(((((.....)))))...)))))))...........))))))....))..))..))).........(((((....(.(((.............))).)....)))))((...((((((((.......................))))))))...))..)).)))).)))))))......(((((((.....)))))))......))))..)))))...((((........)))).))))..))))....)))

Thermodynamic Ensemble Prediction

(((......)))(((...((((..((((..(((((..((((....{((((((.((((((..,,........(((..(((...((.....}}.)))..})}..,,{{{,{{,.{{..{{({{(..,.....,},.((((((((((((......)))((((.......,)),}....)))))))))..(((((((..(((((.....)))))...)))))))..,........))))}).....,..,,..||,.....,,.,{{(((,..{(,{({,,,{...,,...,|||......}})))}....{(({{{(||...,,|....,.........})})))))))...)}..)),}))).))))))}......(((((((.....)))))))......))))..)))))...((((........)))).))))..))))....)))