Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PREX2_0014300

Sequence Length

487 nt

GC Content

0.4353

CCUUCUGUCUUCAAUAACAUAUUCUCCUAAAUUAGAACGUAAGACAUCAGAGGGCAUAAUACCAACAGACAGUGACAAUGAGAAGGGAGAAAGAAACAGCAAACGGGUAUGUUUUAAUGUAGCAGGAGAUGAACAGGAAGAUUCUGGUCAUGACACCAUCAGCAACAGAGACUCUUACAGUGACUGCAACAGCAAUAGGAAUUCCAUCGCCUCCUUCACCAGCAUCUGCAGCAGCCAGUGCAGCUCGUAUUUCCACAGUGAUGAAAUGGACUCAGGUGAUGAACUUCCCUUAAGUGUUCGCAUAUCUCAUGAUAAACAGGACAAGAUACAUAGUUGCCUUGAGCAUCUUUUCAGCCAGAAUUUCAACAGGAAAUGGAACCAAAGCUGAGUUGUCCAAAAAGGCUACGGCUUCAUAUCAAGCAAGAUCCUUGGAAUCUUCCCAGCAGCGUCCGGACUCUUGCUCAGAACAUCAGGAAAUUUGUUGAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-98.20 kcal/mol

Ensemble Metrics

Free Energy: -109.13

Frequency: 0.0000

Diversity: 159.13

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((((((.....((...((((........)))).)))))))...))))))(.......(((((((...(((...(((((((((.....((((((((......)).)))))).........(((..((....(((((((((((((......)))....((((((((((..((((..((((((((....))....((((...((((((((..((((....((((((((((.((....)).))).)))..........))))...))))...))))))))...))))......(((((...((((....))))....)))))........))))))..))))..)))))(((((.....(((((........))))).....)))))))))).....((((.....((((......)))).....))))))))))))))...))...)))...))))).)))).....))).....)))))))..)

Thermodynamic Ensemble Prediction

(((((((((((,....,,...((((........)))}.}}}))),..,})))))(.......{{{{{{{..,{{{...{{,,{{({{{{...{{{((({{......},.)))))}..{{{.(({({{{.((...,((((({((((({{,.{{,.....|||.,..}||||,,}}}|.,,|},,}|||.|||,,....(({{.,.((((((((..,{{,...,(({(((((,{.{{...})),)}}.}||.....,....}})),..}))}...)))))))).,.)))),,,...|||||}}.((((....))))....|||||,.......{{||{{..,..)}}.}}.{(((((.....(((((........))))).....)))))},)))}}...,{((|....||||......,|||,,{|,||,,|||}}}}}}}....,...))),,,,)))))))}}...,.}},.....})))))),.)