Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PRKCI_0009700

Sequence Length

412 nt

GC Content

0.4272

GUUUCAGUGUUGACUGGUGGGCUCUUGGAGUGCUCAUGUUUGAGAUGAUGGCAGGAAGGUCUCCAUUUGAUAUUGUUGGGAGCUCCGAUAACCCUGACCAGAACACAGAGGAUUAUCUCUUCCAAGUUAUUUUGGAAAAACAAAUUCGCAUACCACGUUCUCUGUCUGUAAAAGCUGCAAGUGUUCUGAAGAGUUUUCUUAAUAAGGACCCUAAGGAACGAUUGGGUUGUCAUCCUCAAACAGGAUUUGCUGAUAUUCAGGGACACCCGUUCUUCCGAAAUGUUGAUUGGGAUAUGAUGGAGCAAAAACAGGUGGUACCUCCCUUUAAACCAAAUAUUUCUGGGGAAUUUGGUUUGGACAACUUUGAUUCUCAGUUUACUAAUGAACCUGUCCAGCUCACUCCAGAUGACGA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-102.50 kcal/mol

Ensemble Metrics

Free Energy: -111.07

Frequency: 0.0000

Diversity: 162.56

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((..(((((..((((((((...(((((((.((((.((.(.(((((..(((......)))..))))).).))...)))).)))))))...)))..))))))))))((((......))))((((((....)))))).....))))(((((((((((((((((((((((((.....))))...(((((..((.(((((.......))))).))..)))))((.(((((.((((((((.....)))))...((((...)))).)))))))).))((((((........))))))...)))))))....)))..)))))).....................(((((((....(((.(((((((....(((...)))(((((....))))).))))))).)))))))))))).)))

Thermodynamic Ensemble Prediction

((((,,(({{,.,|||{{{||,{,(((((((,((((.,,.{,{{{{(,,(((,{{..,||}.{|||}}.,..,.,,}))).}))))||,|,|||..}}||||||||{(((,....,)))|((((((....)))))),....,,}}{{{{,,{{{{{{{,{{{{||{{(({.....}))}.|||||||,.{(,{{,,|||,....}}}}}.}}..||||}{{.{||||||||{{(((....,)}))}...((({...)))).))}}}|}|,|}|{(|{{.,,,,...}}}))},,,}}))))),...,}}}})))),}.,,.}.,..,,,{{{{,,.,,{{,||||,}},|||}|{(((((....{{{...,}}{{{,,....})))}.))))))),,)))))))),,,.}))