Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PTK2_0003300

Sequence Length

396 nt

GC Content

0.4924

GAGAAUCCAGCUUUGGCGGUUGCAAUUAAAACAUGUAAAAACUGUACUUCGGACAGCGUGAGAGAGAAAUUUCUUCAAGAAGCCUUAACAAUGCGUCAGUUUGACCAUCCUCAUAUUGUGAAGCUGAUUGGAGUCAUCACAGAGAAUCCUGUCUGGAUAAUCAUGGAGCUGUGCACACUUGGAGAGAAACCUGAUGUGAGACUCUCUCGAGGCAGUAUUGACAGGGAGGAUGGAAGUCUUCAGGGUCCGAUUGGAAACCAACAUAUAUAUCAGCCUGUGGGUAAACCAGAUCCUGCAGCUCCACCAAAGAAACCGCCUCGCCCUGGAGCUCCCGGUCAUCUGGGAAGCCUUGCCAGCCUCAGCAGCCCUGCUGACAGCUACAACGAGGGUGUCAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-109.00 kcal/mol

Ensemble Metrics

Free Energy: -117.27

Frequency: 0.0000

Diversity: 99.57

Structure Visualization

Structure Prediction

MFE Structure Prediction

(....(((((....(((((((.........(((.((....)))))..((((((((((((....(((...(((((...))))).)))....))))((((((((.((.((......)).)).)))))))).(((.((........)).)))))))))))......(((((((((.....(((.((((((...((......))..)))))).)))...((((.(((((((((((....)))))).((.(((....)))..))..............))))).))))...........))))))))).......))))))).....)))))..((((((....))))))..)((((.((.((((..((((...))))...........)))).)).))))

Thermodynamic Ensemble Prediction

(....(((((....(((((((.{.......,,,.{{....,||||..{(((({({{,{{{({{((....}}}||||{{,.,{,,|,..,,{{{.((((,,,|}||,||......,,|)),}}))),,)}||}}|,.}},},||..,||}}})))))),...,.(((((((((,....(((.((((((...({......})..)))))).)))...{,,{.(((((((((((....)))))).((,(((....))}..))..............))))),|}},..,,,.,,,,}))))))))).....,.})))))).....))))).{((((((....)))))).,)((((.((.((((,((({{..,))}}...},,.....)))).)).))))