Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PTK2_0005500

Sequence Length

604 nt

GC Content

0.5265

CCUUAUGACGAAAUGCUGGGCCUAUGACCCCAGCAGGCGGCCCAGGUUUACUGAACUUAAAGCUCAGCUCAGCACAAUCCUGGAGGAAGAGAAGGCUCAGCAAGAAGAGCGCAUGAGGAUGGAGUCCAGAAGACAGGCCACAGUGUCCUGGGACUCCGGAGGGUCUGAUGAAGCACCGCCCAAGCCCAGCAGACCGGGUUAUCCCAGUCCGAGGUCCAGCGAAGGAUUUUAUCCCAGCCCACAGCACAUGGUACAAACCAAUCAUUACCAGGUUUCUGGCUACCCUGGUUCACAUGGAAUCACAGCCAUGGCUGGCAGCAUCUAUCCAGGUCAGGCAUCUCUUUUGGACCAAACAGAUUCAUGGAAUCAUAGACCUCAGGAGAUAGCAAUGUGGCAGCCCAAUGUGGAGGACUCUACAGUAUUGGACCUGCGAGGGAUUGGGCAAGUGUUGCCAACCCAUCUGAUGGAAGAGCGUCUAAUCCGACAGCAACAGGAAAUGGAAGAAGAUCAGCGCUGGCUGGAAAAAGAGGAAAGAUUUCUGAAACCUGAUGUGAGACUCUCUCGAGGCAGUAUUGACAGGGAGGAUGGAAGUCUUCAGGGUCCG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-186.40 kcal/mol

Ensemble Metrics

Free Energy: -197.52

Frequency: 0.0000

Diversity: 238.67

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((.((...((((((((((....((((....)).)).(((((.((.((((.((........)).))))...)).))))).........)))))))))).......))))))))).((((.(((.((((((...(((.....((((((((((.((((.((((((.((..((.........)).)).))))))(((....)))..)))).))))).((...((((...))))..))...((((.((((((.....(((......((((((...........)))))).....))).......))))))))))...((.(((.((((..(((((((((((((..((........(((((...))))).....))..))))))).))....(.((((.((((((((((....))))))...))))..)))).)(((.((((.(((...))))))))))..))))))))))))).((((.(((..........)))..))))......((((.((((.((.((...((((.....((.((........)).))....)))).)).)).)))).)))))))))....)))..)))))).)))))))

Thermodynamic Ensemble Prediction

(((,,,,.,,...(((((((,,,....,|||}}}})){{{(((((({{{.{{||,||,...,.|,}},}|||,.,...|||||.|,...,,.,,||||,,},....}}})||}||}||.(((({(((.{,,((({..,,,...}}|}||||||||}|(({{((((({.,,.,(({{.,{{{,,,|{|,,|}|||,(((....))).}))||{|{{{(,{,...||||,,,}))),.||...{{{{.{{((((....,|||......(((((({,...,...,.}}||||,,...}}),,,,..,|)))}}||||,,.{{,(((.((((,{((,{({{((((({..((.,......(((((...)))))...}.)),.})))))).))..,.|,{|{{.{{{{((((((....))))))...}))),,))))..|||.||||||,.,,,))}})})))).|}}||||},,}}|}|||,..|||},}.}}..,,}},..}}}}....,.|||||,,}}))))}.....,{{{,....|}||},...}}}}.,}},|,,|||}}}}.}),,}}}.}}},},}}||||,|}}..)))))).))),)))