Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PTK2_0008300

Sequence Length

335 nt

GC Content

0.4687

CUGAGGUCAUUUUUGCAAGUAAGGAAAUACAGUUUGGAUCUAGCAUCUUUGAUCCUGUAUGCCUAUCAGCUUAGUACAGCUCUUGCAUAUCUAGAGAGCAAAAGAUUUGUACACAGCCCAGCAGACCGGGUUAUCCCAGUCCGAGGUCCAGCGAAGGAUUUUAUCCCAGCCCACAGCACAUGGUACAAACCAAUCAUUACCAGGACUCUACAGUAUUGGACCUGCGAGGGAUUGGGCAAGUGUUGCCAACCCAUCUGAUGGAAGAGCGUCUAAUCCGACAGCAACAGGAAAUGGAAGAAGAUCAGCGCUGGCUGGAAAAAGAGGAAAGAUUUCUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-81.90 kcal/mol

Ensemble Metrics

Free Energy: -89.41

Frequency: 0.0000

Diversity: 133.51

Structure Visualization

Structure Prediction

MFE Structure Prediction

..((((((.(((((.......(((..(((((....(((((..........)))))))))).)))....(((..(((((((((((.........))))))........)))))..)))(((((.(((.(((....))).))).......(((((...((((((...(((..((........(((((((..((((((.....((((..((((......)))))))).....)))))).....)).)))))..((((...))))....(((((......))).))....))...)))...))))))..))))))))))......))))).))))))..

Thermodynamic Ensemble Prediction

,,({((({.,{{{{,{..{,.{((..{{{((,...{((((.....,,,,,}}||||||}|,}}}.,..||{..(((((({((((,{.......}}}})),..,,}.})))))..,))||||({(({.(((....))).}||,,{(({(((({,..|(({|||.|||,,|{{...,{|...((((,...,|||,,,..,.|{{{{.,{,,,..,,..)))))))}.},|||}||||{{{,.,.}))))},}|}.|||},})}.,,,|||||,...,.)}}.)),,,,)),..}})},,}}}})).,}))))))))}......,}}},.}}}))),,