Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PTK2_0009000

Sequence Length

300 nt

GC Content

0.4133

AUAUGAAUUGAGAAUUCGUUAUUUGCCAAAAGGAUUUCUAAACCAGUUUACUGAAGAUAAGCCAACUUUGAAUUUCUUCUAUCAACAGGUGAAGAGCGAUUAUAUGUUAGAGAUAGCUGAUCAAGUGGACCAGGAAAUUGCUUUGAAGUUGGGUUGUCUAGAAAUACGGACUCUACAGUAUUGGACCUGCGAGGGAUUGGGCAAGUGUUGCCAACCCAUCUGAUGGAAGAGCGUCUAAUCCGACAGCAACAGGAAAUGGAAGAAGAUCAGCGCUGGCUGGAAAAAGAGGAAAGAUUUCUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-59.00 kcal/mol

Ensemble Metrics

Free Energy: -68.77

Frequency: 0.0000

Diversity: 100.22

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.......).(((((((.((.(((((((....(((((((...(((.((..(((.((((((.(((((((((((..(((((.(((....))))))))((((((...............(((.((.....)).)))..))))))))))))))))).))))))...(((((..........))))).....(((...(((((((((..((....(((.(......).)))....)))))))))))....))).)))..))))).)).))))).....))))....))).)).)))....)))).

Thermodynamic Ensemble Prediction

{,,{{{{{{.,,|||||}|,.|{..((....}|,{((((...(((,{{..(((.((((((.(((((((((((,{(((({.,((..,.,,|||,,|((,{((....,,,...,,}.})),.))}.,},},..}}}})))},,})))))))))).))))))...{{{{{,,..,,,.,.}}}}},,.,|{({..,(({((((((,.,,.,},|||.|}}.,,.,.}}}.,..|}}))}}}))),.,.)),.))),.,,))).}}},,.||{{{..,,)))),.....,||||,...,)))).