Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PTK2_0028700

Sequence Length

374 nt

GC Content

0.4305

AAUAUGACAGAUACCUAGCAUCUAGCAAAAUAAUGGCAGCUGCUUACCUUGACCCCAACUUGAAUCACACACCAAAUUCGAGUACUAAGACUCACCUGGGUACUGGUAUGGAACGUUCUCCUGGUGCAAUGGAGCGAGUAUUAAAGGUCUUUCAUUAUUUUGAAAGCAAUAGUGAGCCAACCACCUGGGCCAGUAUUAUCAGGCAUGGAGAUGCUACUGAUGUCAGGAGAUACUCAAUAAAGGUGAAUGAUGUGUUAUACUGUCAAAGUACUACUGCUUGAGAAAUCAUUGCUCACUUCCUAACUAAGUAGAGAGAAGGUUGGAAUGCUAGAGCUGGUCUUAUGGAAGCUUCGGGGUUGCCAGCAUGUUCUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-88.60 kcal/mol

Ensemble Metrics

Free Energy: -96.06

Frequency: 0.0000

Diversity: 135.25

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((........((((...))))........((((((((((((.((..((((...((((((((..........))))))))......((((....)))).(((((((..(((.((((((((.(.....((((.(((((......(.((((((......)))))))((((.((.(((.........))))).)))).((((((((((......((((..((.(((..((((((((...........))).)))))...))).)).))))))).)))))))........))))).).)))......).))).))))).)))...)))))))....))))....)))))).....)))))))).))))))(...)

Thermodynamic Ensemble Prediction

((((((.,.,....({(((.((((((,......,(((((.{(,,({(.{((((....{{,,,.((({..((((..,|||||{(({{,..{{({..,,||||,{||||||.|{,,.{{(((((({({,...{{,|||,,{{......(.((((((......))))))}|{{{.{{.{({|..,...,})}))),)))|(((((((((....))))..}))))|,)})},)}|}}||......))))..)))}..}},.....))))},))),..)))))|(({.......}.)))}|{{|{,.,,....},}.),)})})))}}.}))))))}}}}))}},..{|{,|||,....)))},)))}))))))(...)