Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PTK2_0034100

Sequence Length

563 nt

GC Content

0.4263

GCGAUCAUACUGGGAGAUGCGGGGCAAUGCACUAGAAAAGAAGUCUAACUAUGAAGUAUUAGAAAAAGAUGUUGGUUUAAAGCGAUUUUUUCCUAAGAGUUUACUGGAUUCUGUCAAGGCCAAAACACUAAGAAAACUGAUCCAACAAACAUUUAGACAAUUUGCCAACCUUAAUAGAGAAGAAAGUAUUCUGAAAUUCUUUGAGAUCCUGUCUCCAGUCUACAGAUUUGAUAAGGAAUGCUUCAAGUGUGCUCUUGGUUCAAGCUGGAUUAUUUCAGUGGAACUGGCAAUCGGCCCAGAAGAAGGAAUCAGUUACCUAACGGACAAGGGCUGCAAUCCCACACAUCUUGCUGACUUCACUCAAGUGCAAACCAUUCAGUAUUCAAACAGUGAAGACAAGGACAGAAAAGGAAUGCUACAACUAAAAAUAGCAGGUGCACCCGAGCCUCUGACAGUGACGGCACCAUCCCUAACCAUUGCGGAGAAUAUGGCUGACCUAAUAGAUGGGUACUGCCGGCUGGUGAAUGGAACCUCGCAGUCAUUUAUCAUCAGACCUCAGAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-123.80 kcal/mol

Ensemble Metrics

Free Energy: -135.14

Frequency: 0.0000

Diversity: 178.93

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((.(((....((..(((((((...((((((.((...((((((...(((........)))...((((((((((.....(((((((((((((((((.((((..((((((...((..((........))..)).....))))))..)))).))))).....((((((..(((....)))....(((((((((.......(((((((..(((....)))))).))))........)))))))))((((......))))((((..((((((....)))))).))))))))))((......)).))))))))).....(((........))))))......))).)))))))...))))))..)).))))))..(((((((((((((......((..........))......))))))).............((....))..((.((((((((.(((((..((.......))....)))))))))......(((.((((((.....))))).).))))))))).))))))..))))))).))...))).))).).)((.....))

Thermodynamic Ensemble Prediction

((({(,((,.,.{(({.{{(((((,..((((((.((...((((((..,((,...,,,..}}}...((((((((((.,,..((({,{(({{((({{((.(({{{{(((((({{.((..((,,......||..|,....,|}}}},..},,,.})))).....{((((,..(({....}}},,,.,((((({((..,,{{{({(({((,.(((,...,}}||,.)))}.},,,},,)))))}}))||||.,,}}})))|((((..((((((....)))))).)))))))))}..}}}}..},.}}})))}))}}}..|||...,},.,))})))..,,..))).)))))))...))))))..)).))))))..(({{(({((,(((,.....|}},.,}.....,.......,,.|{{{{..........)))}},,}}).}}|,,{{||||{.{{|||,.{|,....,{||....}}}})}))),.....(((.((((((.....))))).}.)))|||||||||}|||..}}}}}}}.)).,.}}),))),).)|{.....})