Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PTK2_0037900

Sequence Length

391 nt

GC Content

0.4015

UGUUGUUUUUCCCAUUCCUUUUGUUGUAGGUGAAGAGCGAUUAUAUGUUAGAGAUAGCUGAUCAAGUGGACCAGGAAAUUGCUUUGAAGUUGGGUUGUCUAGAAAUACGGCGAUCAUACUGGGAGAUGCGGGGCAAUGCACUAGAAAAGAAGUCUAACUAUGAAGUAUUAGAGCCAAAACACUAAGAAAACUGAUCCAACAAACAUUUAGACAAUUUGCCAACCUUAAUAGAGAAGAAAGUAUUCUGAAAUUCUUUGAGAUCCUGUCUCCAGUCUACAGAUUUGAUAAGGAAUGCUUCAAGUGUGCUCUUGGUUCAAGCUGGAUUAUUUCAGUGGAACUGGCAAUCGGCCCAGAAGAAGGAAUCAGUUACCUAACGGACAAGGGCUGCAAU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-77.90 kcal/mol

Ensemble Metrics

Free Energy: -87.63

Frequency: 0.0000

Diversity: 118.69

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((.(((((((......((((((((..(..(((.(((((.....((((((....(((.((.....)).))).......)))))).....))))))))..)..))))))))......))))))).)))..)))((((..((((.......)))).(((........)))((((.........((..(((((((((............((....((((((..(((....)))....(((((((((.......(((((((..(((....)))))).))))........)))))))))((((......))))((((..((((((....)))))).))))))))))))............)).)))))))..))..........)))))).))

Thermodynamic Ensemble Prediction

,((((((((((((,,..,....,..,,.)).)))))))}}}....{(((((.(.(((((((({...((((((((((...{(({{{((((((((((((((((((.....,{.(((((..{{{{.,,.{{{{.,||,.|||,}|||........|||{,{{....,)},}}}},}}}......,,........})))),........))))))))))...))},,(({,..,{{{,(,,,{{..,}))....}}}||||||,{{(({{,...{{{{..,,))}}.}}},}))),,})))))))))...)))))))))).((((((....))))))....(((({.....)}}}))......}.})))))))))))))}......,....,..,