Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PTK2_0039500

Sequence Length

369 nt

GC Content

0.4309

GUGAAGAGCGAUUAUAUGUUAGAGAUAGCUGAUCAAGUGGACCAGGAAAUUGCUUUGAAGUUGGGUUGUCUAGAAAUACGGCGAUCAUACUGGGAGAUGCGGGGCAAUGCACUAGAAAAGAAGUCUAACUAUGAAGUAUUAGAAAAAGAUGUUGGUUUAAAGCGAUUUUUUCCUAAGAGUUUACUGGAUUCUGUCAAGAGACACGGUUUUACCAUGUUGCCCUGGCUGGUCUCAAACUCCUGACUUAAGCCAUCCACCCGCCUCCGCCUCCCAAAGUGCUGGGAUUACGGAUGUGAACCAUCACACCCAGUCCAGAAAACCAAAUAACAGAUGUGCUUUUUGAGCAAUUCAAUUGCUGCUGAUUUUGAU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-82.70 kcal/mol

Ensemble Metrics

Free Energy: -91.60

Frequency: 0.0000

Diversity: 114.13

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.(..(((((((.....((((((....(((.((.....)).))).......))))))(((..(((((((((....)).)))))))..)))(((((..(((((((.......((((.......)))).(((((((.(.((((.((((((((((.......))).))))))).)))).).)))).)))..(((....)))((((.(((...))).))))....(((((((((..........))))..))))).......))).)))))))))......(((((.....((.(((((....))))).))..)))))..............((..(((((...)))))..)))))))))..).))......

Thermodynamic Ensemble Prediction

((.,..((({{{{...,||{{,,,,|{,{,{{((,,{{{{,.,,,,.,,{{{|||,||(((..((((((({{....}}.)))))))..}}|(((((..(((((((.......{,{{..,,.,,||||.,,.{(((.{.{(((,((((({((((.......)))},)))))).)))}.|.)))}.}))}}}}|,||..|.|||{.(((...))).}))}.,..(((((((((..........))))..))))).......))).)))))))))}..,,,{{{(({{,..((.(((((....))))),)}}))))}}..............,,..|||||}..)))))}})),}}}))),}),)),....,