Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PTK2_0039800

Sequence Length

317 nt

GC Content

0.3943

GUGAAGAGCGAUUAUAUGUUAGAGAUAGCUGAUCAAGUGGACCAGGAAAUUGCUUUGAAGUUGGGUUGUCUAGAAAUACGGCGAUCAUACUGGGAGAUGCGGGGCAAUGCACUAGAAAAGAAGUCUAACUAUGAAGUAUUAGAAAAAGAUGUUGGUUUAAAGCGAUUUUUUCCUAAGAGUUUACUGGAUUCUGUCAAGAAUAUAAAUUUGACAGCAACAUGGAGCACAGAUUGAAAGCAAAAAGAACCAAGAAGACUUGGGAGGUGAUUAAGGAAGAUGAGAUGUGCAAUGAUCAAGGCCUGGAUGGAAUGGCUUCU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-61.20 kcal/mol

Ensemble Metrics

Free Energy: -68.37

Frequency: 0.0000

Diversity: 65.43

Structure Visualization

Structure Prediction

MFE Structure Prediction

....(((((.(((.(((((((....)))).((((.((((((((((((((((((((((((((..(((((((((....)).)))))))..))).......(((......)))(((((........(((((((....)))..))))........)))))))))))))))...)))))..).))))))).))))((((((((........))))))))(((..((.....))..))).............(((((....))))).(((((((((..(.(.((...)).).)..)))))...))))..))).))).)).)))

Thermodynamic Ensemble Prediction

....(((((.(((.{{{{(((....}}||,((((.((((((((((((((((((((((((((..((((((({{....}}.)))))))..)))......{(((......)))|{(({........(((((((....,)}.,))))........))))})))))))))),..}))))..).))))))).}}}}((((((({........)))))))),{,..,,..{{{||..|||....,........(((((....)))))..,,{,{{{,..,...,,.,..),),)..))))),..})))..}}}.})).))}}))