Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PTK2_0041900

Sequence Length

250 nt

GC Content

0.3640

GCAGAACUGGGGCUCCCUUGCAUCUUCCAGUUACAAAUUCAGUGCCUUCUGCAGUUUCCCCAGAGCUCCUCAAGAAUAACGGAAGGGAGAAUAUGACAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCAGUACUCCUCAAAACUGUCAAGGUCAUGAAGGAAACAGUGGAAGUCAGAGAAACUCACAUAUCCAGGAGUUGCCUAAAGAAACAGGAUGAUUACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-36.20 kcal/mol

Ensemble Metrics

Free Energy: -39.78

Frequency: 0.0030

Diversity: 58.53

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((..(((((((......))..((((((.(......((((..((((((((((..((((((.....(((...........))).))).)))..)).)))).....................................................((((..........))))...))))..))))......).))))))...(((...))).....)))))...))))((...................))

Thermodynamic Ensemble Prediction

((({{{(((((((......))..,,||||}}}.....(((,.{(,(((((((,{{((((,(....{((({..........,},.))),),,..||,|||......................................................,,,,..........}))),,,,)})..)),,}}}}}}.})))))).}},,|},,|||......,,,)}}}))))((...............,,..))