Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PTK2_0048500

Sequence Length

472 nt

GC Content

0.5021

AGUCUUGCUGUGUCACCCAGGCUGCCAGGCUGGAGUGGAGUGGCAUGAUCUCGGCUGACUGCAACCUCUGCCUCCCAGAAUAUGACAGAUACCUAGCAUCUAGCAAAAUAAUGGCAGCUGCUUACCUUGACCCCAACUUGAAUCACACACCAAAUUCGAGUACUAAGACUCACCUGGGUACUGGUAUGGAACGUUCUCCUGGUGCAAUGGAGCGAGUAUUAAAGGUCUUUCAUUAUUUUGAAAGCAAUAGUGAGCCAACCACCUGGGCCAGUAUUAUCAGGCAUGGAGAUGCUACUGAUGUCAGGGGCAUCAUUCAGAAGAUAGUGGACAGUCACAAAGUAAAGCAUGUGGCCUGCUAUGGAUUCCGCCUCAGUCACCUGCGGUCAGAGGAGGUUCACUGGCUUCACGUGGAUAUGGGCGUCUCCAGUGUGAGGGAGAAGUAUGAGCUUGCUCACCCACCAGAGGAGUGGAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-135.40 kcal/mol

Ensemble Metrics

Free Energy: -144.55

Frequency: 0.0000

Diversity: 213.02

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((..(((((((((((((((((....))))....))).))))))......)))).))))((((.(((((((((((...((((...((((.((((..(((((.(((((((((((.((......(((((.......(((((..(((..(((((....(.((((((.((......)).)))))).)...(((......))))))))...)))..)))))....))))))).))))))))))).((((..(((((((((...(..((((.((((.......((((.((((((((((.(((....))).)))))).))))(((....((((.((((((((..........))))).)))))))...))).)))).......))).).))))..).)))))))))))))....))))).)))).))))...))))..)))))..))).))).))))((((((......)).))))..

Thermodynamic Ensemble Prediction

.{((.{((({,(({(((((({((,,,{|||}||,|||},|||||},|.,..|}||||}}}{||..||||||||,{|},..,,{,..{{,,..|,{{{{,||,,{,......|||}}}.,}},.,,,,{,......((((({{(,...,,,,..}}}}}|||,,,.,,..,,.,})})))})}})}}.||{...,,{||||||||...,,|{{|||||......,|,{{{(((,,,,,.))}}}}|||{{,{{,{((,.,{..,{||||||{}}}|.{{{,{{.((((((((((.{((,,,,|}}.)))))),}|||,...,,,{{((.{,((((((..{{...||.}))})|||}|}}|{{.,,|{{(|,,,{....}}).)})}}},)}}))})))))})))}}},})))},.}}))})}|)||}}},)},})))),.}},.},)}))))))..,}}}}}}.))}))}}..