Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PTK2_0050300

Sequence Length

241 nt

GC Content

0.4274

GUGAAUAUGAAAGAAGGAUCAGAUGCAACGUUGAGGGAAGAAGACGACCAUGAGCCAAGGAGUGCAGUGCCCUGUAGAAGCUGGAAAAGACAAGCUAAGAGCCUCCAGAAAACAGCACAUCCCUGCUGACGUCUUUAUUUUAGGCCAGUGAGACCCAUUUCAUACUUGUGAUCUACAAAACUAAAAGAUAAUGCACUUGUUGUGUUUUAAGCUCCCAAGUUUGUGGUGAUUUAUUACAGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-41.40 kcal/mol

Ensemble Metrics

Free Energy: -47.82

Frequency: 0.0000

Diversity: 82.03

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((((((...(..(((...((....((((((...(((((((....(.(((...(((((((.((...(((..((.(((.................))).)))))...)).)))).)))..))).)))))))).))))))))...)))..)...)))))))(((((((((((((((......((.(((.((((.....)))).)))..))......)))))))......)))))).))

Thermodynamic Ensemble Prediction

{{,..,{(((({...(,.(((..,({....(({,((,,.(((((((....(.(((.,.(((((((.((...(((.{(,,(((,..........}}}...,}}}),)))...)).)))).))).}))).}))))))).}))}})))..,)}},.},..)))))))|((((({{{{|||{,,{{...{,,(((.({{{.....)))).))}..}),...,}))))))),.....}))))),}}