Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PTN_0000500

Sequence Length

250 nt

GC Content

0.3760

GUGAAGGAGGGAAUCUUCUGUCAACUUCUUGUAGCCACCUCUCCAAGUUGACUUCUCCAGAAUGUAGUCAUCUAACAGUGUAUGUACCUCAUAAUAUUAUNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAACUGGAAGUCUGAAGCGAGCCCUGCACAAUGCCGAAUGCCAGAAGACUGUCACCAUCUCCAAGCCCUGUGGCAAACUGACCAAGCCCAAACCUCAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-30.50 kcal/mol

Ensemble Metrics

Free Energy: -35.30

Frequency: 0.0004

Diversity: 52.60

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.((.((.((.(.(((((((.((..(((((((.((.....(((......((((..(((((....(((....)))..((((((((.....))).)))))........................................................)))))))))......)))....))))))....))))).))))))).).)).)).)).)(.((...((.(((...........)))))...))...)

Thermodynamic Ensemble Prediction

({{,.(({(({{.(((((((.((..{{(((((.((.....({(......((((..(((((..,((((....)),.}|(((((((.....)))},))},........................................................)))))))))....,.)))....)))))).,..},,)).))))))).}.)).}}.))})|..|}{.((.(({...........)}}},..,).,,.)