Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PTPN14_0002300

Sequence Length

363 nt

GC Content

0.5041

AAUCUAGAGAAGCAGAAGAUGGCAGGCCUGGAGGCACAGAAGAGGCCGCUGAUGUUGGCAGCAUUGAAUGGGCUCUCGGUGGCUCGAGUCUCAGGGCGGGAAGAGAAUCGAGUUGAUGCCACCCGGGUUCCCAUGGACGAGAGGUUCAGAACCCUGAAGAAGAAACUAGAAGAGGGAAUGGUGUUCACAGAAUAUGAGCAAAUUCCAAAGAAAAAGGCGAAUGGCAUUUUCAGCACAGCAGCUCUGCCAGAAAACGCCGAGCGCAGCCGAAUCCGUGAAGUUGUCCCCUAUGAGGAGAAUCGAGUAGAGCUGAUACCAACCAAAGAAAAUAACACAGGAUACAUUAAUGCCUCCCACAUCAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-91.90 kcal/mol

Ensemble Metrics

Free Energy: -98.78

Frequency: 0.0000

Diversity: 96.56

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((...........))))(((.(((((.............))))))))(((((.((..(((((((((.((((((.....((((((.((((..((.((((.((((.(((.((((.((((....((((((...(((((.....)))))))))))....................(((((..((((((.......)))))).))))).........((((..(((((.....(((......))).))))).....))))).)))))))))).)).......)).)))))).....)))).)))))))))))).)).....((...............)).....)))))))..)).)))))...

Thermodynamic Ensemble Prediction

.,(((...........,},}{((.(((((.............)))))))|(((((.((..((((((({(((((((({((((((((((.((((..........)})}.}})),,,,..||}}}}.((((((...(((((.....)))))))))))...........,,.......(((((..((((((.......)))))).)))))...,.....,(({..{{||,}||||,{{...,,.|||,}||,.,....}))})}))}}}}}},.{{{{|{{..{{{,{{|,{|..,.|},,,|||,,||},,)))}}}.,,...,...,...,,..},}.))}}.},)))))))..)).))))),..