Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PTPN14_0003400

Sequence Length

318 nt

GC Content

0.4434

GACAAUCAUGGAAACUGUGUACACCUUGGCAUUUUCUUUAUGGGGAUUUUCGUGAGGAACAGAAUUGGAAGACAAGCGGUAAUAUACAGGUGGAAUGACAUGGGGAAUAUCACUCAUAACAAGUCGACCAUUCUAGUGGAGCUCAUCAACAAAGAAGAGACUGCCCUCUUUCACACGGAUGAUAUCGAAAAUGCCAAGUAUAUUUCUCGGUUGUUUGCCACACGACACAAGUUUUACAAACAAAACAAAAUCUGCACUGAACAGUCAAAUUCUCCACCCCCCAUCAGACGCCAGCCCACCUGGAGCCGAUCCUCUCUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-60.80 kcal/mol

Ensemble Metrics

Free Energy: -67.29

Frequency: 0.0000

Diversity: 104.49

Structure Visualization

Structure Prediction

MFE Structure Prediction

..(..(((((((((((.((((.................)))).)).))))))))).)..((((...(((.......((((......(((((((..((.(((((((......(((.......))).(((..(((.((((.((.(((((......((((((......))))))......))))).((((((((((.......))))).)))))((((((....((.......))....)))))).........)).)))))))..)))............)))))).....).))..)))))))..)))).)))..))))

Thermodynamic Ensemble Prediction

({...,,,{(({{{{{((((......((((,,.{((({{(((({,...}})))))}}},,,....{{{.,((({{.(((.{{{{{{(.(((,({.{(.,(((((........))))).....,)).})).,,,..,{,((..(((((......((((((......))))))......)))))..}},|..,,,,...))))))).,,)).)}}}}||))}.,,,}},,..|||||......},,,,.....,|{.{{{,,..,)}},..,,.}}||..,,,}||,.|.,.|{{(.,,..)))}.)}.},),|....})