Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PTPN14_0006200

Sequence Length

393 nt

GC Content

0.3333

GGAUGAUCUUUUACUCAUUAUUAUAUUCUCCCGAAGUUUUUCUUUUUCUUUUUUUUUUUAAACACAGUAUCCUGCAUUUGAUAGGUUCCUUUAGUAAAUGUGUCUUCAUUAAAUGAAUUAAUGAAUAUCAUAUUUUAAAAUAAAAUCUCAUCCCAAAAUGGAAAUAAGUAGAGAAUGGAGUAGAAAAAGAAAAUCCUCUAUUUGAAAUGAGGAUGGGCAGCCUGAAAAUGGAAGCGACAAGUCAGGGUUUAAGAAUAGACUGAGUAAUCUAGAUGUGACUGUAAGUGCUGUAUUUGUGAGAUAUGACACCUGGGUCUUUAAACCAAGAUCGAGUGUAGUAACUAAACUGCUUUUGAGGGGGAGGAUAGAAAAGAAAAGAAUGGAAGGAAGCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-78.50 kcal/mol

Ensemble Metrics

Free Energy: -86.65

Frequency: 0.0000

Diversity: 122.46

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.((....................)))))(....(((((((..(((((((((((((.........((((((.(.(((.(.((((...(((((((((((((..((((((((.....))))))))...))))))).........(((((((.(((...)))...........(((((.((((..........((((((..........))))))..((..((.......))..)).(((.((((..(((((.((.((.......)).))))))).)))))))...)))).))))))))))))...((((.(.((((((......)))))).)))))....))))))..)))).).))).).))))))))))))))))))).)))))))....)

Thermodynamic Ensemble Prediction

(((.((....................)})))(....(((((((..(((((((((((((({..,....{{((((,(,(((,,,((((,,,(((({,(((((((..((((((((.....))))))))...))))))).........,{((((({({,...,}}...,,{{{{{{(,{{,.,,............||{|||}}}}},...})}))))}}|,..{|,,....,)}.,||.,|,{((({,|{(((,,{{.{{.,,....,,.))))}}}.)))))}}..,}})),}}}}}}}}}}}}||.{{{|{(.((((({......}))))).))}||,||.,}},,}}}))}},}.)},,).))}}))))))))))))))).)))))))....)