Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PVT1_0000800

Sequence Length

250 nt

GC Content

0.4080

AGCUUUACAGAAAUUCCAUGCUGCCUUCAGCUUCCUUUGCCGCUCUGCAUCAUGUUGGUAAGUCUCUGCUGAUGCCUGCUGCUGUAGCUUAUUUUUCACUNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCUGCCAACUUCCUUUGGGUCUCCCUAUGGAAUGUAAGACCCCGACUCUUCCUGGUGAAGCAUCUGAUGCACGUUCCAUCCGGCGCUCAGCUGGGCUUGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-41.80 kcal/mol

Ensemble Metrics

Free Energy: -46.28

Frequency: 0.0007

Diversity: 71.16

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((((.((((......(((((...((((...............((((((.((.((......)).))))))))..))))..))))).....))))....................................................................((((((..(........)..))))))............))))))).)((.(.((.........(((((.....))))))).).))

Thermodynamic Ensemble Prediction

((({{{(({(.........(({({..{((((....,{{(({{,...{{,.,,.||}||}}}}.....))))).))..}},}},))))}................................................................,,,,.........((({({.,|...,,,..)..}))}}}.},,,{,,{{||||},|||.|(,{(|(|......}}}|{||{,,,..)))))),.,}))