Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PVT1_0003100

Sequence Length

425 nt

GC Content

0.4729

CUGACCAUACUCCCUGGAGCCUUCUCCCGAGGUGCGCGGGUGACCUUGGCACAUACAGCCAUCAUGAUGGUACUUUAAGUGGAGGCUGAAUCAUCUCCCCUUUGAGCUGCUUGGCACGUGGCUCCCUUGGUGUUCCCCUUUUACUGCCAGGACACUGAGAUUUGGAGAGGCCAACAGAGAUUUUGAGAAACACAUUGAAGGAUCUGUUAACACUUGAUAUACCCAAUAAAAGCAGUGGUUGUGCCAGUGCUGAUCUGUCUUGAUGUGAAUGUGAACAAUGGGAACCUGAGCUGAGCAGUUAAUGCUAGGGUGACAGAAACUGGACCUCUCCCAAGACAUGUGACAGAGUAAUACAGCAGCCAACUUCUUCGCCAAAUUAAAGUUUUACAAGAUUUAACCUGUCAUCAAGACCUGGGAUUUUGGUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-117.90 kcal/mol

Ensemble Metrics

Free Energy: -123.45

Frequency: 0.0001

Diversity: 134.15

Structure Visualization

Structure Prediction

MFE Structure Prediction

...((((...((((.((.(((((.....)))))((.(((((..(((((.(((((.((..(((((.(((((((..(((((((..((((......(((((.....(((((((.......))))))).((((((((((..............))))))))))....)))))))))((((((..((((((........))))))..))))))..)))))))..)))).......((((.((((...)))).)))).....))).))))))).)))))..))).))..))))).))..((((.....))))..((((((((....(((.......)))......((((..((((.............))))..)))).......((((((....))))))...))))))))....)).))))...)))).

Thermodynamic Ensemble Prediction

...((((...((((.(({({{{{|,|,.|||{{{(.{,,((.{(({(({({,,,.,,||{|{||,,||||||,,||{{|,|||||||......||||{.,,..|(((((((((((.{|,((.{{{(..,,(((((....{{{{{...{{||{||,,,||,,,,||}||||}}((((((..((((((........))))))..))))))..},))),,..,,,,.......((((.((((...)))).)))).,,,})))})),,)))}),),)}})),.))}},)))).))}}||||}},..}))}}}|||{||{{...,||{},,},,|}|,.,...,(((({((,((............,||||..,,,,.......|||||,.....,,,}}.,,))))))}}....)}.))))...)))).