Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PVT1_0003500

Sequence Length

395 nt

GC Content

0.4506

GUGAUGGCUUUCCUAGACUCCAUUUAGAGCAAGGAAUUGCAUGUUUAUAAGCGAACUUUGACACUUGCCUCUGCUGAUAUGGCUGGGAAUCCUCUCUUUCAUUCUUCAUUAUUAAUGGGUAUUUAUUAUGUCAUAGGACUUGUCAUUAAAUCUGCUGAAAUCUGGUAAUCCAAGCCUCCAACCCAUAGUUUGCAUCAACCAGGUGGCGACCCCCAGGCUCUGCUGGUUUCCAUUCCUUUAUCUUGAUUCCAUUCCUUUAUCUUGAUUCUCCCUGGCCGAGAGCUUUUCUGACCCACCUAAAAUCUGUUCAUUUCAGACCCCGGCCUUUCCAGGAUGCCUUUUGGAGCCCCUGCUGGCCACCACAUAUCAUGUUCUGAAGUUCUACAGCCCUCUGA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-78.10 kcal/mol

Ensemble Metrics

Free Energy: -85.95

Frequency: 0.0000

Diversity: 135.74

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.((.((..(((((((...((((....(((((((((.((((.((((......))))..)).)).)).))).))))...)))))))))))..)).)).)(((.............((((((..........(((..(((.(((....))).)))..)))....(((....)))........))))))..............((((((.(......(((((((..(((...(((.......(((..(((...........)))..)))......)))))))))))))......))))))).....((((..((((((((....((((....((((...((....))....))))..))))...((((...))))))))))))...)))).....)))

Thermodynamic Ensemble Prediction

{.((.((,,(((((((...({{(.,.,(((({(({,.{(((.((({....,.|}}},.}},}}.,},}}}.})}},,.}})))}}||}}..,,.,}..|||,.,..,,......{{((({.......,,{{{{..{||,,||.,,.}}}.},},.}}}....((({...,||{||.....,,,}},.}}}}}.....}},|(((((,{......{((((((..,(({..{(,.......(((..(((...........)))..)))......,|||||}|}|}}}..,,,.,}}}}},.....{((,..,,,{||||...,||||....{{({,.,||....)),}},}}})..)))).,.{{{{...})))}))))))),,.}}))}}.,,.}}