Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PVT1_0004500

Sequence Length

301 nt

GC Content

0.5382

AGUCUCACUCUGUGGUCCAGGCUGAAGUACAGUGGCAUGAUCCCAGGUCACUGCAACCCCCACCUCCCGGGUUCAAGUGAUCCUCCUGCCUCAGCCUCCCGAGUAGCUGGUAUUACAGGCGUGUGCCACAAAGCCUGGCUAAGUUUUGUAUUUUUAGUAGAGACGGGGUUUCACCAUGUUGGCCAGGUUGGUCUCGAACUCCUGACCUCAAGUGAUCCACUCACUUUGGCCUUUCAACGUGCUGGGAUUACAGGCGAGAGUCACCGCACCCGGACGACUCUGACAUUUUUGAAGAGUCCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-95.70 kcal/mol

Ensemble Metrics

Free Energy: -100.77

Frequency: 0.0003

Diversity: 91.44

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.((((.(.((((((((((((((((........((((.((.....(((((((..(((((.........)))))..))))))).)).)))))))))))((((..(.(((((...((((((..(..((((.......))))..)..))))))...)))))..)..))))....((.((((((((..(((((((((..........))))..((((((.....)))))).))))).)))))))).)))))))))))).)))).)(.(((....)))..((((((..((....)).))))))..)

Thermodynamic Ensemble Prediction

(.((((.(.((((((((({((((((,,,...{{((((,(,....,(((((((,.(((((.........)))))..)))))})}}}.|||||||||},(,,,.,,.|||||...,,{||||.,,,||||,..,{{{||||{{{|{|||,||,,.,,))),,)}})}||....,{}|,,,||||}}||}}}((((..,....,..))))..,(((((..,..)}))))})))),..}}},}}).}})))))))))).)))).)(.(((....)))..((((((..((....)).))))))..)