Sequence Details

BLAST PRIMER
Symbol
hsa_PVT1_0005700
Sequence Length
250 nt
GC Content
0.3880
AAGGAAGUCACUGUGCAUAGCCAUCCCCUAAGAAGAGGGCAUUCCUGCUCUUCCUUCUCCAUGGCUAGAGGAUCUACAUGAACUAUUUAGAUUUUUUCUANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAUAGGAGCCCAGUCCGCUGUCACCUUGAAUUCAGCUUCAUGAACCAGGAGCAGGGAAACCAGCUGAGCCAACCCACAUUCUGACCUAAGGAGCACUGAG

Secondary Structure

Generated by RNAfold
Predictions for this specific transcript isoform.
Minimum Free Energy
-41.60 kcal/mol
Ensemble Metrics
Free Energy: -46.21
Frequency: 0.0006
Diversity: 63.60
Structure Visualization
Structure Prediction
MFE Structure Prediction
.......(((..((((.(((((((......(((((((((((....))))))..)))))..)))))))(((((((((.(((...))).)))))))))..........................................................((.((.((((((.((((...((((..((((......)))).)))).))))))......)))).))...))....((((......))))))))))).
Thermodynamic Ensemble Prediction
{,,,,,,{{,..((((.,{(({{{...,..,{{{{{|||{|....)))}))}})))||,.}}|||||(((((((((.(({...})).))))))))),.....................................................,,,,((,,,...,|||.||||}.,(({(..{(((......)))}.}))){||,||}...,}.))),.}},........{(((......))))))}},))}
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