Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PVT1_0006000

Sequence Length

250 nt

GC Content

0.3400

GCCAACAGAGAUUUUGAGAAACACAUUGAAGGAUCUGUUAACACUUGAUAUACCCAAUAAAAGCAGUGGUUGUGCCAGUGCUGAUCUGUCUUGAUGUGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUGCCAGACCUUUCUAGUGCUUUCUUCUAGUAACCACCCCAGCAAAGAUGCUCAGCAAAUGGGUGGUGCAUGAAACAAAGGGUCAUUAUCCUAUUUCUUGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-40.60 kcal/mol

Ensemble Metrics

Free Energy: -45.17

Frequency: 0.0006

Diversity: 53.40

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((((((...(((((((((...(((((.((((........................((((.((((...)))).)))).(((......)))..........................................................)))))))))...))).))))))...(((.((((((.((((....))))........))))))))).........(((((....)))))))))).)).

Thermodynamic Ensemble Prediction

.....(((({{{...(({{{{(((.{,(({((.((((,{,....,||.......,......((((.((((...)))).)))).{{{......))),,........................................................}}||||||}...}|}.}}}}}|,..{{.{((((((.((({....})))..,.....)))))))))..}},....|||||,...,}))}}}))),}).