Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PVT1_0007800

Sequence Length

250 nt

GC Content

0.4320

AGCCAGUCUUGGUGCUCUGUGUUCACCUGGUUCAUCUGAGGAGCUGCAUCUACCCUGCCCAUGCCAUAGAUCCUGCCCUGUUUGCUUCUCCUGUUGCUGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCACAUUUUGCCCAUAUAGAAAAGCAUAUCCCGACCGGGCACAGUGGCUCACGCCUGUAAUCCCAGGACUUUGGAAGCCCAAGAUGGGUGGAUCACAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-48.30 kcal/mol

Ensemble Metrics

Free Energy: -53.00

Frequency: 0.0005

Diversity: 38.76

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((.......).)))(((((((((((((((..(((((.((....(((.......))).....)).)))))...)))......((..(....)..)).....................................................(((((....(((((.......................)))))..))))).....((((......))))..(((((....)))))..))))))).))).))

Thermodynamic Ensemble Prediction

((((,....,}).}))(((((((((((({{,.,{{{,{(((,((.({((({{....{{....})..))))}...}}},}|,..||,,|,,..}..)).,,..................................................(((((....(((((.....,,........},......)))))..)))))....,((((......)))).,,{(((....))))).,))))))).)))}})