Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PVT1_0008500

Sequence Length

411 nt

GC Content

0.5158

AAGGACAGAAUAACGGGCUCCCAGAUUCACAAGCCCCACCAAGAGGAUCACCCCAGGAACGCUUGGAGGCUGAGGAGUUCACUGAGGCUACUGCAUCUUGAGACUCAGGAUGAAGACCCAGCUUGGGGCUGUCAAAGGUUUUUUGCAUGUCUGACACCCAUGACUCCACCUGGACCUUAUGGCUCCACCCAGAAGCAAUUCAGCCCAACAGGAGGACAGCUUCAACCCAUUACGAUUUCAUCUCUGCCCCAACCACUCAGCAGCAAGCACCUGUUACCUGUCCACCCCCACCCCUUCCCCCAAACUGCCUUUGAAAAAUCCCUAACCUAUGAGCUUUGAAUAAGAUGAGUACGAACUUCAUCGCCCACGUGGCGUGGCCGGCCUCGUGUCUAUUAAAUUCUUUUUCUACUA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-95.40 kcal/mol

Ensemble Metrics

Free Energy: -103.04

Frequency: 0.0000

Diversity: 116.50

Structure Visualization

Structure Prediction

MFE Structure Prediction

..((((((..((((((((((((((..((.(((((....((..(.((....)))..))...)))))))..))).))))....(((.((...((.((((((((...)))))))).)).))))).(((((((.(((((((((((.......(((((.....)).))).......))))))).))))........(((((...((..((.....))..))..)))))......................))))))).......((.....)).))))))).)))))).................((((.....))))..............................(((((((....)).)))))...((((.(((.......))).)))).......................

Thermodynamic Ensemble Prediction

,,((({((,,({,,((((((((((.,((.(((((....((..(.((....})},.))...))))))),.))).))))}}}.(((,((,{.({.((((((((...)))))))).}).}}}||.{((((({.{((((((((,,,,,{...((({{.....}},)))......,|||||}}.})),},,,....(((((..,{{..{{.....)).|||,,|}}}}..........{{,...,,,.,,||,,,,,.......||}}..,}}.,})))),.)))))).................||||..}}}})}}}.....,,,,.......},},},,,.....(((((((....))}})))),.,((((.{{|,,,,..,))),))))..........,}},,,......,