Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PVT1_0008700

Sequence Length

274 nt

GC Content

0.5000

GUUUUUUGCAUGUCUGACACCCAUGACUCCACCUGGACCUUAUGGCUCCACCCAGAAGCAAUUCAGCCCAACAGGAGGACAGCUUCAACCCAUUACGAUUUCAUCUCUGCCCCAACCACUCAGCAGCAAGCACCUGUUACCUGUCCACCCCCACCCCUUCCCCCAAACUGCCUUUGAAAAAUCCCUAACCUAUGAGCUUUGAAUAAGAUGAGUACGAACUUCAUCGCCCACGUGGCGUGGCCGGCCUCGUGUCUAUUAAAUUCUUUUUCUACUA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-36.50 kcal/mol

Ensemble Metrics

Free Energy: -42.46

Frequency: 0.0001

Diversity: 72.51

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((.((((...((((....((((((.(((....)))..)))))).......)))).))))............((.((((((........................((((............))))..(((....)))..)))))).))...............))))((.....((((((.........................(((((((....)).)))))...((((.(((.......))).))))............))))))...))

Thermodynamic Ensemble Prediction

({,,.,(((..,((((....((((({.(((....)))..}))))).,.....}}}},||},,,{.,{.,....||.((((((.,............{{,...,}}.{(((............))))..,{,...,))}..))))}}.................{{||,,,..,,,|,,,,............,},},,.,},,...(((((((....})}}))))...((((.(((,......))).))))........,...,,,,,,...,}