Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_QSOX2_0002500

Sequence Length

347 nt

GC Content

0.5303

ACUGGGCCAGUGCCAUUCGCGUCGCAGCUCUGGACUGCAUGGAAGAGAAGAACCAGGCCGUGUGCCAUGACUACGACAUCCACUUCUACCCCACCUUCCGGUAUUUUAAAGCAUUUACAAAGGAGUUUACAACUGGAGAAAAUUUUAAAGGACCUGACCGAGAGCUGCGAACAGUCAGACAGACGAUGAUUGACUUCCUGCAGAACCACACGGAAGGAAGCCGGCCCCCUGCCUGCCCGCGCCUAGACCCCAUUCAGCCCAGUGAUGUUCUUUCCCUUCUUGACAACCGUGGCAGCCAUUACGUGGCUAUUGUCUUUGAAAGCAACAGCUCCUACCUUGGACGGGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-81.10 kcal/mol

Ensemble Metrics

Free Energy: -89.00

Frequency: 0.0000

Diversity: 82.10

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((.((((.....((((((((((((((.(.......((((((((((......(.(((((......)).))).).....))))).......)))))(((.((((((((..(((....((..........))....))).)))))))).)))....).)))))))))).((((((.........)))))).(((((((........)).)))))...((.(((.....))).)).)))).........))))..)))))))..(((((((((.......((((...(((((.((......)).)))))))))...))))).)))).(((((.........)))))

Thermodynamic Ensemble Prediction

,((((((..{((,....,||{(((((((((({(......,((,,{(((((......{.(((((......)).))).).....)))))...,,,.}}||}(((.{(((((({..(((....{{..|,,....,)),,.},,..}))))))}.))).,.}).)))))))))).((((((.........)))))).(((((((........)).)))))...((.(((.....))).)).,)}))}}}).{{{|,||{{|,,,||,,.(((((((((.......((((,..,{{{{,(({{,...))}))),)))))...))))).)))}.|||||...,,))).))),)