Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_RNF169_0001300

Sequence Length

428 nt

GC Content

0.4907

GCUGGAGUACAGUGGCAUGAUCUCGACUCACUGCAACUUCUGCCUCCUGGGUUCAAGUGAUUGUCCUGCCUCAGCCUCUCGGGUAGCUGGGAUUACAGGUGCCCACCACCACACCCAGCUAAUUUUUUUGUAUUUUUAGUAGAGAUGGGGUUUCACCACGUUGACCAGGCUGGUUUUGAACUCCUGGCCUCAAGUGAUCUGCCUGCCUUGGCCUCACGAAGUGCUUGGAUUACAGACUUUAUAUUCAGAGCACCAAUCAAAUUAAGCAAGCCUGGGGAACUUCGUGAGGAAUAUGAAAGCUUGAGAAAGUGUCCUGCACGUCUCUCAGAUUCAGAGAAUGAAGAACCUUCUCGAGGCCAGAUGACACAGACACAUCGCUCGGCAUUUGUUUCCAAGAACAACUCCUACUCCUUAGCUUUCCUGGCAGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-113.30 kcal/mol

Ensemble Metrics

Free Energy: -124.54

Frequency: 0.0000

Diversity: 155.84

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.(((((.((((((..((....))..))))))..))))).))((.(((((....((((((((((.((..((((((((..(((((.(((......))).)))))(((.(((......(((((.............))))).....))))))(((((...(((..(((((((.(((((((..(((.(((((...((((...(((......))).))))..)).))).))).......((((......))))......)))))....)).)))))))..)))...))))).....((((...((((((..((((...))))...)))))).))))(((((.(......)))))))))))....)))..)))))).)))))).((.(.((((((....)))))).)))..............)))))..))

Thermodynamic Ensemble Prediction

((.(((((.(((((({.,{,...,|.,|}}}})..}},}}.}}{,.,,|||,,,.((((((((({,((..(({{((({..(((((,(((,,....}}|,||}}},,|,||,..|||}|||{{.............}}))},},}.}|||||{({{{{{,(((..((((({{|{{{{,||,,|||,{{{{{|..(({(...(((......))),||||{,|(((((({{{{............,,}}})))),}...,}......,,}.}))})))..})),}}))))}},,..((((...((((((..((((...)))).,.)))))}.}))}(((((.(......,)))))))))),,,.}))..)))))).)))))).||,..{(((((....)))))),}))..,,}|...||{..,,.)),,))