Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_RNF20_0002600

Sequence Length

679 nt

GC Content

0.4551

GGAGAAGGAGAGGGAACGAGAAAGAGAACGGGAGAAGGAGAAGGAGAGAGAACGAGAGAAGCAGAAGCUAAAAGAGUCAGAAAAAGAGAGAGAUUCUGCUAAGGAUAAAGAGAAAGGCAAACAUGAUGAUGGACGGAAAAAGGAAGCAGAAAUUAUCAAACAAUUGAAGAUUGAACUCAAGAAGGCACAGGAGAGCCAAAAGGAGAUGAAACUAUUGCUGGAUAUGUACCGUUCUGCCCCAAAGGAACAGAGAGACAAAGUUCAGCUGAUGGCAGCUGAGAAGAAGUCUAAGGCAGAGUUGGAAGAUCUAAGGCAAAGACUCAAGGAUCUGGAAGAUAAAGAGAAGAAAGAGAACAAGAAAAUGGCUGAUGAGGAUGCCUUGAGGAAGAUCCGGGCAGUGGAGGAGCAGAUAGAAUACCUACAGAAGAAGCUAGCCAUGGCCAAGCAGGAAGAAGAAGCACUCCUCUCUGAAAUGGAUGUCACAGGCCAGGCCUUUGAAGACAUGCAGGAGCAAAAUAUCCGUUUGAUGCAGCAAUUGCGGGAGAAGGAUGAUGCAAAUUUCAAGCUCAUGUCAGAGCGUAUCAAGUCCAAUCAGAUCCAUAAGUUGCUUAAAGAAGAGAAGGAGGAGCUGGCAGACCAGGUGUUGACUCUGAAGACUCAGGUUGAUGCCCAGCUACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-139.70 kcal/mol

Ensemble Metrics

Free Energy: -152.84

Frequency: 0.0000

Diversity: 160.79

Structure Visualization

Structure Prediction

MFE Structure Prediction

...........................................................(((....)))....(((((........(((..(((((((((...............((((...........((((((........((((..((((.((((....)))).))))...(((.....(((........))).....)))..........)))).........))))))))))((...)).......((((....((((((((....)))))))).....))))..)))))))))......)))........)))))....((((...)))).........................((((((.((.(..((((....(((...))).(((.((((...(((......................)))..)))).)))..............(((.(((((((((.((((((((((((.((((...)))).))......(((....)))..)))))))))).....(((((((...(((((.(((((((((.........((((......))))))))))..)))..))...)))...)))))))......)))).)))))..)))))))..)))(((((((((.((((....)))))))))))))))))))...

Thermodynamic Ensemble Prediction

,.....,.,,..,,..{...........{.......,,..............,......(((,,,,}||....,,,{{............,}.|}|||||..((((.......{{((({..{.({(({{{...,............,....})))))|..{{{{{...})))}..(((.....(((........))).....)))......{{.((((({{({.,.,.(({,(((((({{...}}.......((((....((((((((....)))))))).....))))..)))))),.})).,.))})..})))},,.{((....{(((...,},,...,},...........,.......,}.|}.....}..)))))).......)))).(((.((((...{((...........,,.........)))..)))).)))..||...........||.|||||||||.,,,((,((((({.((((...)))).}}..,,}}|,|,,,,}},...,})))}|||..,,,(((((((...((({{.(((((((((.........((((......)))))))))}.,)))..))...)))...))))))),.....})}}..}}}}.,||{((....)},|((((((((.((({....)))))))))))))),})).,..