Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_RNF20_0002800

Sequence Length

363 nt

GC Content

0.4628

UUGGAAGAUCUAAGGCAAAGACUCAAGGAUCUGGAAGAUAAAGAGAAGAAAGAGAACAAGAAAAUGGCUGAUGAGGAUGCCUUGAGGAAGAUCCGGGCAGUGGAGGAGCAGAUAGAAUACCUACAGAAGAAGCUAGCCAUGGCCAAGCAGGAAGAAGAAGCACUCCUCUCUGAAAUGGAUGUCACAGGCCAGGCCUUUGAAGACAUGCAGGAGCAAAAUAUCCGUUUGAUGCAGCAAUUGCGGGAGAAGGAUGAUGCAAAUUUCAAGCUCAUGUCAGAGCGUAUCAAGUCCAAUCAGAUCCAUAAGUUGCUUAAAGAAGAGAAGGAGGAGCUGGCAGACCAGGUGUUGACUCUGAAGACUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-79.90 kcal/mol

Ensemble Metrics

Free Energy: -86.36

Frequency: 0.0000

Diversity: 89.75

Structure Visualization

Structure Prediction

MFE Structure Prediction

((...((((((.((.......))...))))))....))(...(((.....((((..(((.(...((((((....((((.((....))...)))).(((.((((...(((......................)))..)))).)))..............(((.(((((((((.((((((((((((.((((...)))).))......(((....)))..)))))))))).....(((((((...(((((.(((((((((.........((((......))))))))))..)))..))...)))...)))))))......)))).)))))..)))..))).)))..).))).)))).....))).)

Thermodynamic Ensemble Prediction

((,..,(((((.{({,.....||{,.||}|||....}}{...{{{.....{{{{..{{,.....{{{||,.,,,},.|||||}|,,..,,})),,||)}|{,({(...({{,...,{{{{||.........{{{{,|,.},}},...,.,,.......(((.(((((((((.,{{(({((((({.((((...)))).))..,,,,|{|,,,,}},...}})))}}}}...,.(((((((...((({{.(((((((((.........((((......)))))))))}.,)))..))...)))...)))))))......)))),,))))..))),,},,.)))}})})),.,)))}....))).}