Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SETDB1_0001000

Sequence Length

170 nt

GC Content

0.4588

GGUAUAUGAGUGUAACAAACGCUGCAAAUGUGACCCAAACAUGUGCACAAACCGGUUGGUGCAACAUGGACUACAAGUUCGGCUACAGCUAUUCAAGACACAGAACAAGGGCUGGGGUAUCCGCUGCUUGGAUGACAUUGCCAAAGGCUCUUUUGUUUGUAUUUAUGCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-33.60 kcal/mol

Ensemble Metrics

Free Energy: -38.94

Frequency: 0.0002

Diversity: 46.85

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((((((((.....))))).))..))).)))(...(((((((((..........)))).))))).....(((((.(((((.(((((.(((........)))....))))).))...)))..)))))...((((..(((...))).....))))((((....)))))

Thermodynamic Ensemble Prediction

(((((((((((((.....))))).)}.,))),}))(...(((((((((.,.....,,.)))),,)))){{{{...}}}},(((..,,}}}...,.....{{,||{,{{(((((,.{{((((({.....})))},.....}))...)))))},.})))|||,,,,.,}},)