Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SETDB1_0007800

Sequence Length

430 nt

GC Content

0.4744

CUUAUUCAGAGUCUAAUAAAGGAAAAUGGGCCAUUGUCACCUCAUCAAGUCCUUCACUAUAAUUACUGUUAGGUCUUCUCCUACUUCUUUAGCCUUGACUUCCUGCCUUAUUUUCUUUCAUCCAGCAUCUAAUCUUCCUCUUGCCACCGCCCUUUCCUGCCAAACCGUGGGUAACAGCAAGGACUUAAAGGAGCCCUUCCCAUUUACUUCUCUUACUUCUUACCCUCCUGCUUCCCCAGGAUGUCCUGACACUGUCCAGCAGCACAGAAAGUGAGGGGGAAAGUGGGACCAGCCGAAAGCCCACUGCUGGUCAGACUUCGGCUACAGCGGUUGACAGUGAUGAUAUCCAGACCAUAUCCUCUGGCUCUGAAGGGGAUGACUUUGAGGACAAGAAGAACAUGACUGGUAGCCUGGAAAAAUUUUGGGAAUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-99.30 kcal/mol

Ensemble Metrics

Free Energy: -109.23

Frequency: 0.0000

Diversity: 167.57

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.....)))(......(((((((((((((....((((.......(((.(((.((.((....)).))..))).)))...(((......)))...)))).....))).))))))))))...(((((((....(((((.((((((....((((................))))....)))))).(((((((...((((((((((((.((((.(((((((.......(((((......)))))....(((...((((...))))..))).))))))))))).))))))(((((((.(........).)))))))..(((((((((.....)))))).)))...((...(((((........))))).)).)))))).....))))))).....)))))..))).))))...(((((((...)))))))...)

Thermodynamic Ensemble Prediction

{{{..,,,|||(,.....(((((((((((((....((({.......{((,{{{.,{,,,....,,.,},,|||.,,,..,}}},,....,}}...)))).....))),,))))))))}...(((((((,,..((((({((,,{,....,((({{{{,,(,{,,,,,{{||||,..,|}||||,{{({{{{|,|,||||{((({{{.{,|{,{{{{(({,|,..,,(((((,,....||||},,,.{{{...{{{{...)))).,})),}}))))))))).)))))))|,,((({(,,..,,,,}.}}}))}|.,,{|||||||...,}))))),,)),,,.{{...{{(((..,.....}}))).,,.))))))).,,.,..,))))}..}))})}..})).))))...{{{|||,...,})))))...}