Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SHKBP1_0001800

Sequence Length

205 nt

GC Content

0.5951

GUCCAGGAGGUGCAGCCCAUCACCAGUUAUGACGCGGCAGGCUCCUUCCUCCUCCUGGGCUGCAACAACGGCUCCAUUUACUACGUGGAUGUGCAGAAGUUCCCCUUGCGCAUGAAAGACAACGACCUCCUUGUCAGCGAGCUCUAUCGGGACCCAGCGGAGGAUGGGGUCACCGCCCUCAGUGUCUACCUCACCCCCAAGACCA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-60.80 kcal/mol

Ensemble Metrics

Free Energy: -64.02

Frequency: 0.0054

Diversity: 32.37

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((..((.((((.((.....(((......(((.((((..((((((.((((((..((((((((((.((.....(((((.......))))))))))))....((((..((.((.((...(((((........)))))..)).))..))..))))))))).)))))).)))))).))))..)))))).....)))))).))..))...

Thermodynamic Ensemble Prediction

.{(..((.((((.((.....(((......(((.((((..((((((.((((((..(((((((((,.{{...,,(((((.......))))}||||||}....{{{{..||,||,{{...(((((.{....,.)))))..}),))......)))}))))).)))))).)))))).))))..)))))).....)))))).))..)}...