Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SHKBP1_0003400

Sequence Length

377 nt

GC Content

0.6127

CUGUAGGAGCCUUGCUUCAGCUGGGAAAGGGGCCUCGGAGGAUGUUCUGGAUGAAGGGACUCUGAGCAGAGACCUAGAGGACAAGUAGGAAGGAGCAGAAGAAAGAAGGCAGGGGAAGGGGGCCCCAGCCUGAGGGAACUGUAUGUGCAGAGGCUGAGAAGGGCCAAAUAGGGUCACAUGGGAAGGACACGUGGGCUCCUGGGCUGGAGCACAGAACAGGAGGUGAGGAUGGGGUGCAGAUGCGGGCGGGCCUUGUCAGGCUGUGGAAGGGCUGAGGCUUUGUCCUGUGCGGGGAGCCGUGGCCACUGCAUGGGGGAUGAAAGGAGGCUUGAUGGGAGGCCAGGAGCCCAGGGAGGAGGCCAGGAGGCUGAUAGGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-134.00 kcal/mol

Ensemble Metrics

Free Energy: -139.33

Frequency: 0.0002

Diversity: 89.75

Structure Visualization

Structure Prediction

MFE Structure Prediction

((....(.(((((.((((..(((((.....((((((......((((((...((...(..(((((.(......).)))))..)...))....)))))).........((((.((((.......)))).)))).......((((((.((((..((((......)))).......(((.(.......)))).(.(.(.((((((..(((.....)))..)))))).).).)......)))).)))))).((((((((.(((..(((((.(..(((((.(((((..(((.....)))))))).)))))..).)))))....)))...))))))))....)))))).....)))))))))))))))....))((......))

Thermodynamic Ensemble Prediction

((....{.(((((.((((..(((((.....((((((.,,,..({((({...,|,,.|..|{({{.{,.....||}))}}..}...)),...})}))}.........((((.((((.......)))).)))).......((((((.((((..((((......)))).......{{(.{,{,.......},|,|,(.((((((..(((.....)))..)))))).).}.}......)))).)))))).((((((((.(((..(((((.{.,(((({.(((({,.{((,....})}))))).})))).,).)))))....))}...))))))))....)))))).....))))),))}))))))....))((......))