Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SHPRH_0007200

Sequence Length

247 nt

GC Content

0.3158

GCCCCACUUCCCAAAACCUCCACGCUGGGUAUCAAAUUUCAGCAUGAGUAUUGCUGAGGACAAACUCAAAUCAUAGCACUAUUUCUGUGAAAAAUGUCAUCAGAAUUUUAAUAGGGAUUGCAUUGAGUCUAUAGAUUAUGUUAUAUAAUAUUUAUGUAACAAUAUUAGUUCAGUUCAUGAACAUAUGUCUUUCCAUUUGUGUUCUCUUUAAUUUUUUUAUUAAUGUUUCAUAGUUUUCAGUGUACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-42.10 kcal/mol

Ensemble Metrics

Free Energy: -47.33

Frequency: 0.0002

Diversity: 71.61

Structure Visualization

Structure Prediction

MFE Structure Prediction

(...............)((..((((((((.........((((((.......))))))(((((.((((((..((...(.((((((((((((......))).)))).....))))))...))..)))))).....(((..((((((((((...))))))))))..))).(((((.....)))))...)))))......(((((....(.(((((......))))).)...)))))..))))))))..))

Thermodynamic Ensemble Prediction

(...............}((..({((((((........||||||{.,.....))}|||{{{,..{{{{{{..{{..,{.{{{{((((((((......))).))))}....,}}})}}..}|,,|}|||},....{{,..((((((((({...}))))))))),,||,.(((((.....})))),,|}|},.....,..||||,,,.,.{((((......))))).}...)))))..})))))))..))