Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SHPRH_0008800

Sequence Length

250 nt

GC Content

0.3160

CUACACGUGUGAUGAUACUGACAGCUGUGAAAGAAAUGAAUGGAAAAAAAGGAGUGUCCAUCCUUUCCAUCUAUAAGUAUGUCAGUUCUAUAUAUAGAUANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGGGGGACAGAGGAAAGAAGGGCAGAGAAAUUCUUUCCUGGAUUUCAUGAAAUCACUGAGGCCAGAGCAACAGAUCAUUUAACUUUUCUUUAUCCCGU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-37.30 kcal/mol

Ensemble Metrics

Free Energy: -42.66

Frequency: 0.0002

Diversity: 47.96

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.((....)))((...((((((((((..((..((((.((.((((............)))))).))))..))....))).)))))))((((....)))).........................................................((((.(((((((((.((((.(((.....))).)))).(((((....))))).(((..((....))..))).........))))))))).))))))

Thermodynamic Ensemble Prediction

(,{{....}}},,,,.((((((((((.,,...{,...{.{((((,....{(((...,,,.))})))))))),,,.))).))))))){(({....)))).........................................................((((.(((((((((.{(((.((((,..,))),)))},({(({,...,}}}).(((..((....))..))).........))))))))).))))})