Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SHPRH_0008900

Sequence Length

194 nt

GC Content

0.4278

GUAAUUGGCAAGUAAAUCACAGAAAAGGGAACAGCAAGCAGAUGUCACAGAUAUCUAAGACCCAUAGAAAAGGCAGAAUCAGGGCACUGAGCUCUACUGGGGACAGAGGAAAGAAGGGCAGAGAAAUUCUUUCCUGGAUUUCAUGAAAUCACUGAGGCCAGAGCAACAGAUCAUUUAACUUUUCUUUAUCCCGU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-36.30 kcal/mol

Ensemble Metrics

Free Energy: -39.23

Frequency: 0.0087

Diversity: 50.26

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((...((((.....(((((((..((........(((((((...)))))))....((((((((....((....((((....)))))))))).)))).....(((((((((...........))))))))).(((((....))))).(((..((....))..))).....))..))))))))))).))).

Thermodynamic Ensemble Prediction

,....({{...{{,{...,,{{{{{{(,,{,........(((((((...)))))))....((({{(({...{{{....((((....)))))))))},))))..,,.(((((((((...........))))))))),({(((,...,}}}).{((..((....))..))).....,}..))))))))},),))},